CAZyme Information: MGYG000004414_00383

Basic Information

• Species: Agathobacter sp900549895
• Lineage: Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter; Agathobacter sp900549895
• CAZyme ID: MGYG000004414_00383
• CAZy Family: GH127
• CAZyme Description: Non-reducing end beta-L-arabinofuranosidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
638	MGYG000004414_5|CGC2	73246.19	4.8862

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000004414	2422277	MAG	Israel	Asia

• Gene Location: Start: 37132; End: 39048 Strand: -

Full Sequence      

MRLKTVQLSNMNITDPFWKQYTDLVEDVIIPYQWDIMNDNVPGVESSHCLENFKIAAGLK
KGQFYGAVFQDTDVAKWLEAVGYSLAEKKNEKLEKLADDAIDLIVQAQQEDGYLDTYFII
KEPEQKWKNLCEGHELYSAGHMIEAAIAYYEGTGKRKLLDSMIKLADLICRTFGPEEGQN
HGYPGHQEIELALVRLYRVTKDKKYLEQAKYFLDIRGTGENYFLEERKQANFKRIFPEFE
DYDPSYSQSHKPVRQQKTAEGHAVRAVYMYSAMADVAEEYQDKELMQACVNLWENITQKR
MYVTGGIGSSGFLERFTTDYDLPNDCNYSETCASIGMALFSLRMANITRDSRYIEVVEQE
LYNNILAGIAQDGKSFFYVNPLEIKPQQCMPHTSRAHVKSRRQKWFGVACCPPNIARTLA
SLGQYIYGVDGTSIYTHLYIGNQTDIPVNNNVVQITMDSMFPWEGNIKVKVQGVKENIKL
YLRIPGYAENFRLYCDGKEQELVENNGYAILELCKDSEISIQFEMPVEFLHANCKVSADI
GKVVIKRGPIVYCLEEIDNGSDLQCIYLNNKEVQKKKSTDFSECLELELQGKRLISPDEG
LYSSVGLNYENTDIRAIPYAYWNNRGEGEMVVWIHEMI

Enzyme Prediction     

No EC number prediction in MGYG000004414_00383.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH127	12	553	2.1e-216	0.9961832061068703

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG3533	COG3533	0.0	13	636	14	587	Uncharacterized conserved protein, DUF1680 family [Function unknown].
pfam07944	Glyco_hydro_127	4.53e-164	10	553	1	503	Beta-L-arabinofuranosidase, GH127. One member of this family, from Bidobacterium longicum, UniProtKB:E8MGH8, has been characterized as an unusual beta-L-arabinofuranosidase enzyme, EC:3.2.1.185. It rleases l-arabinose from the l-arabinofuranose (Araf)-beta1,2-Araf disaccharide and also transglycosylates 1-alkanols with retention of the anomeric configuration. Terminal beta-l-arabinofuranosyl residues have been found in arabinogalactan proteins from a mumber of different plantt species. beta-l-Arabinofuranosyl linkages with 1-4 arabinofuranosides are also found in the sugar chains of extensin and solanaceous lectins, hydroxyproline (Hyp)2-rich glycoproteins that are widely observed in plant cell wall fractions. The critical residue for catalytic activity is Glu-338, in a ET/SCAS sequence context.
cd00249	AGE	8.68e-06	95	215	138	270	AGE domain; N-acyl-D-glucosamine 2-epimerase domain; Responsible for intermediate epimerization during biosynthesis of N-acetylneuraminic acid. Catalytic mechanism is believed to be via nucleotide elimination and readdition and is ATP modulated. AGE is structurally and mechanistically distinct from the other four types of epimerases. The AGE domain monomer is composed of an alpha(6)/alpha(6)-barrel, the structure of which is also found in glucoamylase and cellulase. The active form is a homodimer. The alignment also contains subtype III mannose 6-phosphate isomerases.
cd04792	LanM-like	2.13e-05	89	210	563	677	Cyclases involved in the biosynthesis of class II lantibiotics, and similar proteins. LanM-like proteins. LanM is a bifunctional enzyme, involved in the synthesis of class II lantibiotics. It is responsible for both the dehydration and the cyclization of the precursor-peptide during lantibiotic synthesis. The C-terminal domain shows similarity to LanC, the cyclase component of the lan operon, but the N terminus seems to be unrelated to the dehydratase, LanB.
COG1331	YyaL	9.84e-05	83	209	418	560	Uncharacterized conserved protein YyaL, SSP411 family, contains thoiredoxin and six-hairpin glycosidase-like domains [General function prediction only].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
BBF45268.1	6.87e-293	1	636	1	640
QAA32625.1	2.73e-278	2	638	8	651
AWY98667.1	1.29e-265	1	638	4	656
BCN30063.1	6.30e-264	2	637	5	676
VCV23453.1	9.13e-264	2	638	5	650

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
4QJY_A	3.29e-212	9	636	14	647	Crystalstructure of native Ara127N, a GH127 beta-L-arabinofuranosidase from Geobacillus Stearothermophilus T6 [Geobacillus stearothermophilus],4QJY_B Crystal structure of native Ara127N, a GH127 beta-L-arabinofuranosidase from Geobacillus Stearothermophilus T6 [Geobacillus stearothermophilus]
4QK0_A	2.96e-205	9	636	14	647	Crystalstructure of Ara127N-Se, a GH127 beta-L-arabinofuranosidase from Geobacillus Stearothermophilus T6 [Geobacillus stearothermophilus],4QK0_B Crystal structure of Ara127N-Se, a GH127 beta-L-arabinofuranosidase from Geobacillus Stearothermophilus T6 [Geobacillus stearothermophilus],4QK0_C Crystal structure of Ara127N-Se, a GH127 beta-L-arabinofuranosidase from Geobacillus Stearothermophilus T6 [Geobacillus stearothermophilus],4QK0_D Crystal structure of Ara127N-Se, a GH127 beta-L-arabinofuranosidase from Geobacillus Stearothermophilus T6 [Geobacillus stearothermophilus]
3WRE_A	1.50e-155	10	633	2	655	Thecrystal structure of native HypBA1 from Bifidobacterium longum JCM 1217 [Bifidobacterium longum subsp. longum JCM 1217],3WRG_A The complex structure of HypBA1 with L-arabinose [Bifidobacterium longum subsp. longum JCM 1217]
3WKW_A	2.10e-155	10	633	2	655	Crystalstructure of GH127 beta-L-arabinofuranosidase HypBA1 from Bifidobacterium longum ligand free form [Bifidobacterium longum subsp. longum JCM 1217],3WKX_A Crystal structure of GH127 beta-L-arabinofuranosidase HypBA1 from Bifidobacterium longum arabinose complex form [Bifidobacterium longum subsp. longum JCM 1217],7BZL_A Chain A, Non-reducing end beta-L-arabinofuranosidase [Bifidobacterium longum subsp. longum JCM 1217],7DIF_A Chain A, Non-reducing end beta-L-arabinofuranosidase [Bifidobacterium longum subsp. longum JCM 1217],7EXV_A Chain A, Non-reducing end beta-L-arabinofuranosidase [Bifidobacterium longum subsp. longum JCM 1217],7EXW_A Chain A, Non-reducing end beta-L-arabinofuranosidase [Bifidobacterium longum subsp. longum JCM 1217]
7EXU_A	5.92e-155	10	633	2	655	ChainA, Non-reducing end beta-L-arabinofuranosidase [Bifidobacterium longum subsp. longum JCM 1217]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
E8MGH8	8.20e-155	10	633	2	655	Non-reducing end beta-L-arabinofuranosidase OS=Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b) OX=565042 GN=hypBA1 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000079	0.000001	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000004414_00383.