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CAZyme Information: MGYG000004203_02298

You are here: Home > Sequence: MGYG000004203_02298

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Acetatifactor;
CAZyme ID MGYG000004203_02298
CAZy Family GH55
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1000 MGYG000004203_24|CGC1 112056.04 4.6827
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004203 2860639 MAG United Kingdom Europe
Gene Location Start: 29860;  End: 32862  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004203_02298.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH55 51 598 5.1e-80 0.7297297297297297

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam12708 Pectate_lyase_3 5.01e-16 370 542 1 213
Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.
pfam12708 Pectate_lyase_3 3.15e-10 43 207 20 169
Pectate lyase superfamily protein. This family of proteins possesses a beta helical structure like Pectate lyase. This family is most closely related to glycosyl hydrolase family 28.
COG5434 Pgu1 4.20e-04 353 482 65 223
Polygalacturonase [Carbohydrate transport and metabolism].
COG3386 YvrE 0.001 720 786 18 85
Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism].
cd05819 NHL 0.004 726 784 7 71
NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ADU28861.1 3.53e-239 7 990 11 976
QEM14394.1 1.06e-221 4 990 19 982
AHW60618.1 4.91e-221 7 990 24 988
QIA08652.1 1.89e-218 6 980 21 967
AYL99405.1 1.56e-217 4 990 23 992

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
7CHU_A 1.35e-06 371 538 75 231
ChainA, Putative pectin lyase [Geobacillus virus E2],7CHU_B Chain B, Putative pectin lyase [Geobacillus virus E2],7CHU_C Chain C, Putative pectin lyase [Geobacillus virus E2]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
D4B0V1 1.55e-09 368 596 509 752
Probable glucan endo-1,3-beta-glucosidase ARB_02077 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=ARB_02077 PE=1 SV=1
P49426 4.54e-07 54 479 113 535
Glucan 1,3-beta-glucosidase OS=Cochliobolus carbonum OX=5017 GN=EXG1 PE=1 SV=1
Q37893 9.38e-06 371 438 104 171
Pre-neck appendage protein OS=Bacillus phage B103 OX=10778 GN=12 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000062 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000004203_02298.