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CAZyme Information: MGYG000004203_01965

You are here: Home > Sequence: MGYG000004203_01965

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Acetatifactor;
CAZyme ID MGYG000004203_01965
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
532 MGYG000004203_18|CGC2 58893.93 4.3584
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004203 2860639 MAG United Kingdom Europe
Gene Location Start: 58754;  End: 60352  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004203_01965.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 245 513 1.9e-42 0.7507692307692307

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 2.89e-12 233 430 172 394
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 2.61e-10 272 475 81 273
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02793 PLN02793 7.39e-06 243 356 140 260
Probable polygalacturonase
PLN02218 PLN02218 7.97e-04 170 508 101 410
polygalacturonase ADPG

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ABX43664.1 1.35e-234 47 529 35 515
BCK00431.1 2.73e-220 19 532 9 520
ACI19833.1 5.38e-146 52 522 28 475
ACK41503.1 3.82e-143 56 522 32 475
QTE67472.1 2.17e-123 16 523 3 479

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 7.96e-10 279 532 193 437
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.983375 0.007903 0.000359 0.000063 0.000033 0.008283

TMHMM  Annotations      download full data without filtering help

start end
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