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CAZyme Information: MGYG000004201_01116

You are here: Home > Sequence: MGYG000004201_01116

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species CAG-110 sp900553805
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Oscillospiraceae; CAG-110; CAG-110 sp900553805
CAZyme ID MGYG000004201_01116
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
518 56988.19 4.6151
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000004201 2436088 MAG United Kingdom Europe
Gene Location Start: 18722;  End: 20278  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000004201_01116.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 213 496 1.6e-42 0.7569230769230769

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 8.77e-12 138 342 141 337
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 1.02e-10 187 411 43 240
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02188 PLN02188 1.86e-10 225 337 125 241
polygalacturonase/glycoside hydrolase family protein
PLN02793 PLN02793 5.12e-08 221 387 142 335
Probable polygalacturonase
PLN02155 PLN02155 4.59e-05 219 323 112 222
polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ACK41503.1 5.28e-139 48 495 32 464
ACI19833.1 3.71e-136 48 495 32 464
ABX43664.1 1.76e-129 45 518 41 518
BCK00431.1 1.87e-129 69 518 87 520
QTE67472.1 2.47e-121 22 515 6 484

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A1DBR6 4.15e-08 140 407 146 388
Probable endopolygalacturonase D OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pgaD PE=3 SV=1
P49062 4.67e-07 220 328 134 251
Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 SV=1
P48979 2.36e-06 219 374 113 269
Polygalacturonase OS=Prunus persica OX=3760 PE=2 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.997065 0.000442 0.000036 0.000003 0.000002 0.002489

TMHMM  Annotations      download full data without filtering help

start end
13 35