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CAZyme Information: MGYG000004172_00044
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; ; | |||||||||||
| CAZyme ID | MGYG000004172_00044 | |||||||||||
| CAZy Family | GH105 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 52884; End: 54845 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH105 | 311 | 642 | 1.5e-77 | 0.9548192771084337 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG4225 | YesR | 1.60e-66 | 310 | 651 | 29 | 355 | Rhamnogalacturonyl hydrolase YesR [Carbohydrate transport and metabolism]. |
| pfam07470 | Glyco_hydro_88 | 4.90e-63 | 310 | 642 | 22 | 335 | Glycosyl Hydrolase Family 88. Unsaturated glucuronyl hydrolase catalyzes the hydrolytic release of unsaturated glucuronic acids from oligosaccharides (EC:3.2.1.-) produced by the reactions of polysaccharide lyases. |
| pfam01261 | AP_endonuc_2 | 3.33e-23 | 90 | 281 | 58 | 245 | Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae. |
| COG1082 | YcjR | 4.79e-17 | 90 | 281 | 75 | 268 | Sugar phosphate isomerase/epimerase [Carbohydrate transport and metabolism]. |
| COG3622 | Hyi | 6.02e-11 | 112 | 264 | 98 | 241 | Hydroxypyruvate isomerase [Carbohydrate transport and metabolism]. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| SCM55422.1 | 1.63e-138 | 295 | 652 | 615 | 969 |
| QUT90052.1 | 7.01e-125 | 295 | 649 | 29 | 380 |
| ALJ58834.1 | 1.98e-124 | 295 | 649 | 29 | 380 |
| AWL08075.1 | 1.72e-112 | 289 | 649 | 17 | 377 |
| ACU05080.1 | 1.09e-107 | 289 | 650 | 27 | 388 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1NC5_A | 9.90e-36 | 308 | 641 | 33 | 359 | Structureof Protein of Unknown Function of YteR from Bacillus Subtilis [Bacillus subtilis],2D8L_A Crystal Structure of Unsaturated Rhamnogalacturonyl Hydrolase in complex with dGlcA-GalNAc [Bacillus subtilis] |
| 2GH4_A | 3.84e-35 | 308 | 641 | 23 | 349 | ChainA, Putative glycosyl hydrolase yteR [Bacillus subtilis] |
| 4WU0_A | 1.72e-28 | 315 | 649 | 23 | 361 | StructuralAnalysis of C. acetobutylicum ATCC 824 Glycoside Hydrolase From Family 105 [Clostridium acetobutylicum ATCC 824],4WU0_B Structural Analysis of C. acetobutylicum ATCC 824 Glycoside Hydrolase From Family 105 [Clostridium acetobutylicum ATCC 824] |
| 3QWT_A | 5.42e-22 | 296 | 626 | 45 | 356 | ChainA, Putative GH105 family protein [Salmonella enterica subsp. enterica serovar Paratyphi A],3QWT_B Chain B, Putative GH105 family protein [Salmonella enterica subsp. enterica serovar Paratyphi A],3QWT_C Chain C, Putative GH105 family protein [Salmonella enterica subsp. enterica serovar Paratyphi A],3QWT_D Chain D, Putative GH105 family protein [Salmonella enterica subsp. enterica serovar Paratyphi A] |
| 3PMM_A | 6.39e-19 | 315 | 646 | 66 | 377 | ChainA, Putative cytoplasmic protein [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| O34559 | 5.42e-35 | 308 | 641 | 33 | 359 | Unsaturated rhamnogalacturonyl hydrolase YteR OS=Bacillus subtilis (strain 168) OX=224308 GN=yteR PE=1 SV=1 |
| O31521 | 2.73e-23 | 313 | 652 | 27 | 341 | Unsaturated rhamnogalacturonyl hydrolase YesR OS=Bacillus subtilis (strain 168) OX=224308 GN=yesR PE=1 SV=1 |
| T2KPL9 | 8.79e-11 | 413 | 594 | 159 | 329 | Unsaturated 3S-rhamnoglycuronyl hydrolase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22220 PE=2 SV=1 |
| P0A3U6 | 1.24e-10 | 423 | 594 | 5 | 163 | Protein Atu3128 OS=Agrobacterium fabrum (strain C58 / ATCC 33970) OX=176299 GN=Atu3128 PE=3 SV=1 |
| P0A3U7 | 1.24e-10 | 423 | 594 | 5 | 163 | 24.9 kDa protein in picA locus OS=Rhizobium radiobacter OX=358 PE=2 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000235 | 0.999139 | 0.000171 | 0.000160 | 0.000153 | 0.000137 |