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CAZyme Information: MGYG000004151_04907
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Pseudomonas citronellolis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas citronellolis | |||||||||||
| CAZyme ID | MGYG000004151_04907 | |||||||||||
| CAZy Family | PL5 | |||||||||||
| CAZyme Description | Alginate lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 8411; End: 9538 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL5 | 35 | 349 | 2.3e-176 | 0.9936708860759493 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK00325 | algL | 0.0 | 13 | 372 | 3 | 359 | polysaccharide lyase. |
| cd00244 | AlgLyase | 0.0 | 32 | 368 | 2 | 339 | Alginate Lyase A1-III; enzymatically depolymerizes alginate, a complex copolymer of beta-D-mannuronate and alpha-L-guluronate, by cleaving the beta-(1,4) glycosidic bond. |
| pfam05426 | Alginate_lyase | 1.67e-56 | 69 | 310 | 1 | 274 | Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AMO78461.1 | 1.05e-276 | 1 | 375 | 1 | 375 |
| ANI17130.1 | 2.04e-274 | 1 | 375 | 1 | 375 |
| CDF82327.1 | 3.36e-250 | 1 | 374 | 1 | 374 |
| QRY82532.1 | 1.40e-218 | 19 | 375 | 11 | 370 |
| QIE91031.1 | 1.99e-218 | 19 | 375 | 11 | 370 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4OZV_A | 1.07e-201 | 35 | 368 | 1 | 334 | CrystalStructure of the periplasmic alginate lyase AlgL [Pseudomonas aeruginosa PAO1] |
| 4OZW_A | 3.58e-200 | 35 | 368 | 1 | 334 | CrystalStructure of the periplasmic alginate lyase AlgL H202A mutant [Pseudomonas aeruginosa PAO1] |
| 7FHZ_A | 5.43e-36 | 56 | 371 | 1 | 303 | ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a] |
| 7FHU_A | 6.34e-36 | 56 | 371 | 1 | 303 | ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHU_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHV_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHV_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHW_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHW_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHX_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHX_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHY_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FHY_B Chain B, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FI0_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a],7FI1_A Chain A, Polysaccharide lyase [Stenotrophomonas maltophilia K279a] |
| 7FI2_A | 1.74e-34 | 56 | 371 | 1 | 303 | ChainA, Polysaccharide lyase [Stenotrophomonas maltophilia K279a] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| B7UUU9 | 2.56e-205 | 25 | 373 | 18 | 366 | Alginate lyase OS=Pseudomonas aeruginosa (strain LESB58) OX=557722 GN=algL PE=3 SV=1 |
| Q06749 | 2.09e-204 | 25 | 373 | 18 | 366 | Alginate lyase OS=Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) OX=208964 GN=algL PE=1 SV=2 |
| Q02R18 | 2.09e-204 | 25 | 373 | 18 | 366 | Alginate lyase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) OX=208963 GN=algL PE=3 SV=1 |
| A6V1P7 | 1.21e-203 | 25 | 373 | 18 | 366 | Alginate lyase OS=Pseudomonas aeruginosa (strain PA7) OX=381754 GN=algL PE=3 SV=1 |
| Q9ZNB7 | 7.87e-171 | 18 | 375 | 11 | 374 | Alginate lyase OS=Cobetia marina OX=28258 GN=algL PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000715 | 0.998373 | 0.000248 | 0.000273 | 0.000187 | 0.000162 |