logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000003992_02228

You are here: Home > Sequence: MGYG000003992_02228

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species 43-108 sp001915545
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; 43-108; 43-108 sp001915545
CAZyme ID MGYG000003992_02228
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
485 MGYG000003992_37|CGC1 54615.57 6.0234
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003992 3355495 MAG United Kingdom Europe
Gene Location Start: 4709;  End: 6166  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003992_02228.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 208 466 1.4e-40 0.7476923076923077

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00295 Glyco_hydro_28 2.84e-10 210 461 88 274
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
COG5434 Pgu1 5.39e-10 207 464 218 455
Polygalacturonase [Carbohydrate transport and metabolism].
PLN03010 PLN03010 2.51e-06 190 398 115 311
polygalacturonase
PLN03003 PLN03003 1.14e-04 217 398 148 292
Probable polygalacturonase At3g15720
PLN02793 PLN02793 0.002 228 431 171 361
Probable polygalacturonase

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QUT92200.1 7.36e-159 3 485 5 461
ALJ62050.1 1.20e-157 3 485 5 461
QUU00181.1 8.66e-156 18 485 20 464
QQR19335.1 1.72e-154 3 485 17 470
ANU59785.1 1.72e-154 3 485 17 470

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1HG8_A 3.28e-06 229 397 126 267
Endopolygalacturonasefrom the phytopathogenic fungus Fusarium moniliforme [Fusarium verticillioides]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
A1DBR6 2.63e-07 205 431 231 422
Probable endopolygalacturonase D OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=pgaD PE=3 SV=1
Q7M1E7 8.59e-07 205 342 155 288
Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1
Q9LW07 1.83e-06 210 398 141 292
Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1
P49062 2.27e-06 229 406 168 332
Exopolygalacturonase clone GBGE184 OS=Arabidopsis thaliana OX=3702 GN=PGA3 PE=2 SV=1
Q5AYH4 3.47e-06 229 433 294 471
Probable endopolygalacturonase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=pgaD PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.002878 0.992973 0.003386 0.000263 0.000232 0.000227

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003992_02228.