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CAZyme Information: MGYG000003925_02540
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | CAG-882 sp900545175 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; CAG-882; CAG-882 sp900545175 | |||||||||||
| CAZyme ID | MGYG000003925_02540 | |||||||||||
| CAZy Family | PL9 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 3879; End: 8579 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL9 | 928 | 1310 | 6.5e-124 | 0.9733333333333334 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd00063 | FN3 | 1.94e-05 | 464 | 537 | 8 | 93 | Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases. |
| pfam00041 | fn3 | 7.76e-04 | 460 | 530 | 3 | 85 | Fibronectin type III domain. |
| pfam13229 | Beta_helix | 0.002 | 1026 | 1148 | 38 | 138 | Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. |
| smart00060 | FN3 | 0.003 | 458 | 523 | 2 | 79 | Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins. |
| pfam13229 | Beta_helix | 0.003 | 1075 | 1221 | 9 | 128 | Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ADL35206.1 | 0.0 | 26 | 1273 | 1133 | 2397 |
| ABX44216.1 | 3.40e-311 | 361 | 1325 | 224 | 1197 |
| BCJ94249.1 | 9.17e-309 | 231 | 1341 | 94 | 1213 |
| ACR71158.1 | 2.07e-233 | 351 | 1318 | 607 | 1648 |
| QQV81252.1 | 2.80e-167 | 540 | 1334 | 86 | 879 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1RU4_A | 2.52e-41 | 931 | 1206 | 18 | 292 | ChainA, Pectate lyase [Dickeya chrysanthemi] |
| 5OLQ_A | 5.13e-19 | 931 | 1191 | 6 | 303 | Rhamnogalacturonanlyase [Bacteroides thetaiotaomicron],5OLQ_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLQ_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLS_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P22751 | 3.64e-63 | 570 | 1210 | 80 | 643 | Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1 |
| P0C1A6 | 1.89e-42 | 931 | 1300 | 43 | 386 | Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1 |
| P0C1A7 | 2.36e-40 | 931 | 1206 | 43 | 317 | Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1 |
| P12625 | 6.97e-06 | 466 | 566 | 353 | 460 | Poly(3-hydroxybutyrate) depolymerase OS=Ralstonia pickettii OX=329 PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000285 | 0.998991 | 0.000212 | 0.000179 | 0.000156 | 0.000140 |
