dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000003874_00468

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Basic Information help

Species

Merdibacter sp900759455

Lineage

Bacteria; Firmicutes; Bacilli; Erysipelotrichales; Erysipelotrichaceae; Merdibacter; Merdibacter sp900759455

CAZyme ID

MGYG000003874_00468

CAZy Family

GH73

CAZyme Description

hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
576		63606.82	6.4219

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003874	1971751	MAG	United States	North America

Gene Location

Start: 1626; End: 3356 Strand: -

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000003874_00468.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GH73	276	392	7.9e-17	0.984375

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd14256	Dockerin_I	2.75e-19	514	570	1	57	Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex.
pfam00404	Dockerin_1	9.15e-19	515	570	1	56	Dockerin type I repeat. The dockerin repeat is the binding partner of the cohesin domain pfam00963. The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome. The dockerin repeats, each bearing homology to the EF-hand calcium-binding loop bind calcium.
pfam01832	Glucosaminidase	1.20e-09	277	342	1	77	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase. This family includes Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase EC:3.2.1.96. As well as the flageller protein J that has been shown to hydrolyze peptidoglycan.
COG4193	LytD	3.70e-09	225	385	57	222	Beta- N-acetylglucosaminidase [Carbohydrate transport and metabolism].
cd14253	Dockerin	6.33e-09	515	566	1	52	Dockerin repeat domain. Dockerins are modules in the cellulosome complex that often anchor catalytic subunits by binding to cohesin domains of scaffolding proteins. Three types of dockerins and their corresponding cohesin have been described in the literature. This alignment models two consecutive dockerin repeats, the functional unit.

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QJA02388.1	1.51e-224	27	549	30	564
QSI26463.1	4.01e-224	1	549	1	562
QIX08957.1	1.07e-209	27	549	30	564
ANU71450.1	4.33e-209	27	549	30	564
ASU21015.1	4.33e-209	27	549	30	564

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
4Q2W_A	2.75e-12	130	398	59	289	CrystalStructure of pneumococcal peptidoglycan hydrolase LytB [Streptococcus pneumoniae TIGR4]

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P59205	3.80e-12	130	398	427	657	Putative endo-beta-N-acetylglucosaminidase OS=Streptococcus pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4) OX=170187 GN=lytB PE=1 SV=1
P59206	3.98e-12	130	398	471	701	Putative endo-beta-N-acetylglucosaminidase OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) OX=171101 GN=lytB PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000747	0.998270	0.000423	0.000177	0.000177	0.000165

TMHMM Annotations download full data without filtering help

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