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CAZyme Information: MGYG000003769_00656
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium; | |||||||||||
| CAZyme ID | MGYG000003769_00656 | |||||||||||
| CAZy Family | PL1 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 75632; End: 79327 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL9 | 644 | 1051 | 3.4e-124 | 0.984 |
| PL1 | 235 | 404 | 2.9e-45 | 0.8316831683168316 |
| CBM77 | 1122 | 1224 | 2.9e-34 | 0.9805825242718447 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG3866 | PelB | 1.46e-77 | 101 | 512 | 1 | 340 | Pectate lyase [Carbohydrate transport and metabolism]. |
| smart00656 | Amb_all | 4.96e-32 | 241 | 406 | 17 | 190 | Amb_all domain. |
| pfam18283 | CBM77 | 6.71e-32 | 1120 | 1226 | 2 | 108 | Carbohydrate binding module 77. This domain is the non-catalytic carbohydrate binding module 77 (CBM77) present in Ruminococcus flavefaciens. CBMs fulfil a critical targeting function in plant cell wall depolymerisation. In CBM77, a cluster of conserved basic residues (Lys1092, Lys1107 and Lys1162) confer calcium-independent recognition of homogalacturonan. |
| pfam00544 | Pec_lyase_C | 1.40e-18 | 211 | 402 | 1 | 211 | Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. |
| NF033761 | gliding_GltJ | 1.78e-06 | 561 | 632 | 423 | 493 | adventurous gliding motility protein GltJ. Adventurous gliding motility protein GltJ, also known as AgmX, occurs in delta-proteobacteria such as Myxococcus xanthus. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AOR96287.1 | 0.0 | 23 | 1079 | 36 | 1108 |
| QMW93302.1 | 0.0 | 23 | 1079 | 36 | 1108 |
| BBK78741.1 | 0.0 | 23 | 1079 | 36 | 1108 |
| ADL51369.1 | 0.0 | 9 | 1064 | 16 | 1249 |
| ABX41986.1 | 4.08e-299 | 5 | 1066 | 3 | 1165 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1RU4_A | 1.77e-36 | 646 | 937 | 16 | 294 | ChainA, Pectate lyase [Dickeya chrysanthemi] |
| 5FU5_A | 5.79e-23 | 1120 | 1226 | 7 | 111 | Thecomplexity of the Ruminococcus flavefaciens cellulosome reflects an expansion in glycan recognition [Ruminococcus flavefaciens] |
| 3VMV_A | 1.47e-21 | 241 | 404 | 80 | 248 | Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5] |
| 3ZSC_A | 3.35e-21 | 235 | 387 | 63 | 221 | Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima] |
| 1VBL_A | 2.20e-20 | 241 | 402 | 133 | 330 | Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P0C1A6 | 1.29e-37 | 646 | 1051 | 41 | 399 | Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1 |
| P0C1A7 | 1.58e-35 | 646 | 937 | 41 | 319 | Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1 |
| P22751 | 2.14e-35 | 647 | 935 | 391 | 639 | Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1 |
| Q65DC2 | 7.13e-28 | 191 | 411 | 64 | 281 | Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1 |
| Q8GCB2 | 7.13e-28 | 191 | 411 | 64 | 281 | Pectate trisaccharide-lyase OS=Bacillus licheniformis OX=1402 GN=pelA PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000399 | 0.998828 | 0.000193 | 0.000205 | 0.000174 | 0.000154 |