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CAZyme Information: MGYG000003734_02636
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Afipia broomeae | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Afipia; Afipia broomeae | |||||||||||
| CAZyme ID | MGYG000003734_02636 | |||||||||||
| CAZy Family | AA3 | |||||||||||
| CAZyme Description | 5-(hydroxymethyl)furfural oxidase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 25071; End: 26765 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| AA3 | 3 | 563 | 2.8e-87 | 0.5048543689320388 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| PRK02106 | PRK02106 | 1.23e-112 | 1 | 562 | 1 | 532 | choline dehydrogenase; Validated |
| COG2303 | BetA | 2.46e-91 | 1 | 563 | 3 | 535 | Choline dehydrogenase or related flavoprotein [Lipid transport and metabolism, General function prediction only]. |
| TIGR03970 | Rv0697 | 2.69e-79 | 7 | 562 | 2 | 487 | dehydrogenase, Rv0697 family. This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. |
| pfam05199 | GMC_oxred_C | 1.06e-35 | 371 | 557 | 1 | 143 | GMC oxidoreductase. This domain found associated with pfam00732. |
| pfam00732 | GMC_oxred_N | 8.65e-27 | 88 | 305 | 23 | 218 | GMC oxidoreductase. This family of proteins bind FAD as a cofactor. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| CAG5086058.1 | 5.01e-56 | 5 | 562 | 14 | 564 |
| CAB3230510.1 | 8.47e-56 | 9 | 559 | 28 | 553 |
| CAG5089487.1 | 2.34e-55 | 6 | 559 | 17 | 556 |
| QWC20507.1 | 5.77e-55 | 1 | 559 | 1 | 522 |
| AWP09430.1 | 7.60e-55 | 3 | 559 | 17 | 548 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 4UDP_A | 8.55e-136 | 1 | 562 | 1 | 528 | Crystalstructure of 5-hydroxymethylfurfural oxidase (HMFO) in the oxidized state [Methylovorus sp. MP688],4UDP_B Crystal structure of 5-hydroxymethylfurfural oxidase (HMFO) in the oxidized state [Methylovorus sp. MP688],4UDQ_A Crystal structure of 5-hydroxymethylfurfural oxidase (HMFO) in the reduced state [Methylovorus sp. MP688],4UDQ_B Crystal structure of 5-hydroxymethylfurfural oxidase (HMFO) in the reduced state [Methylovorus sp. MP688] |
| 6F97_A | 3.41e-135 | 1 | 562 | 1 | 528 | Crystalstructure of the V465T mutant of 5-(Hydroxymethyl)furfural Oxidase (HMFO) [Methylovorus sp. MP688],6F97_B Crystal structure of the V465T mutant of 5-(Hydroxymethyl)furfural Oxidase (HMFO) [Methylovorus sp. MP688] |
| 4UDR_A | 2.72e-134 | 1 | 562 | 1 | 528 | Crystalstructure of the H467A mutant of 5-hydroxymethylfurfural oxidase (HMFO) [Methylovorus sp. MP688],4UDR_B Crystal structure of the H467A mutant of 5-hydroxymethylfurfural oxidase (HMFO) [Methylovorus sp. MP688] |
| 4HA6_A | 7.52e-61 | 7 | 555 | 3 | 498 | Crystalstructure of pyridoxine 4-oxidase - pyridoxamine complex [Mesorhizobium loti] |
| 3T37_A | 1.11e-60 | 7 | 555 | 19 | 514 | Crystalstructure of pyridoxine 4-oxidase from Mesorbium loti [Mesorhizobium loti] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| E4QP00 | 4.68e-135 | 1 | 562 | 1 | 528 | 5-(hydroxymethyl)furfural oxidase OS=Methylovorus sp. (strain MP688) OX=887061 GN=MPQ_0130 PE=1 SV=1 |
| Q47944 | 1.52e-67 | 3 | 559 | 2 | 525 | L-sorbose 1-dehydrogenase OS=Gluconobacter oxydans OX=442 PE=3 SV=1 |
| Q8G1Z8 | 8.89e-66 | 7 | 562 | 4 | 526 | Oxygen-dependent choline dehydrogenase OS=Brucella suis biovar 1 (strain 1330) OX=204722 GN=betA PE=3 SV=1 |
| A6X2G7 | 8.89e-66 | 7 | 562 | 4 | 526 | Oxygen-dependent choline dehydrogenase OS=Brucella anthropi (strain ATCC 49188 / DSM 6882 / CCUG 24695 / JCM 21032 / LMG 3331 / NBRC 15819 / NCTC 12168 / Alc 37) OX=439375 GN=betA PE=3 SV=1 |
| A9M9H8 | 4.69e-65 | 7 | 562 | 4 | 526 | Oxygen-dependent choline dehydrogenase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) OX=483179 GN=betA PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.997862 | 0.001379 | 0.000776 | 0.000009 | 0.000004 | 0.000007 |