CAZyme Information: MGYG000003701_04734

Basic Information

• Species: Parabacteroides sp003480915
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae; Parabacteroides; Parabacteroides sp003480915
• CAZyme ID: MGYG000003701_04734
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
999		111665.82	8.8621

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003701	6084075	Isolate	China	Asia

• Gene Location: Start: 56018; End: 59017 Strand: -

Full Sequence      

MRKILTMLFCSVCLLTAKAQTIPNMYRNTDQAKMNHWVDSVFDAMTYDERIGQLFMVIAE
PKSENRNMQRLMRYVNEIKIGGILFHKGNPVTQAEVTNRLQKASRVPMFVSLDGEWGLSM
RLSGTTRFPKNMMLGAIEDDKLITEYGQEVARQCKEMGIQINFAPDIDVNSNTDNPVIGL
RSFGENPRAVADKGIAYARGLERAGIISVAKHFPGHGDTSEDSHNTLPAVHHDRARLDSV
ELYPFKRYIYDGYAGIMTGHLYIPALDKTRNLPSSLSRPIVTGLLKEELGFKGLCFTDAL
AMKGASTSKSDNPSVKALLAGNDILLAPAAPINDFTAVKEAIDEGILNIEDIEAKCIKIL
QYKYITGLNNYRPIETKGLSKRLNSPHAAWLAAKLNAEAITLLKNEDNIVPVRQLDKKKI
AALSIGASAGNEFQEILGRYDSVACFSISRNSTAAQIQNVYKQLEKYDVIICGVHTVRIP
ESQLLRGLATKKEVIYAFFTLPYFCKEYKSSILKAKAVIMGYEGTPLAQEYAAQVIFGGV
PAKGKLPVTIPGLFHAGSGIFTEKTRLGYHEPEEVGANAVRLDVIESIVEEGLEQKAYPG
CQVLVAKDGMVIYDKSFGYFDYSQKQNVKENSVYDLASASKAAGTLLAVMKAYDEKKFTL
NNKISDYIPELKESNKKDLNIKELLYHQSGVISTINFYLDAIDKDSYKGSLYSREKNATH
PVRFDAKTYVRNDFSYLPELVSTTKKPGFTTEVARNFYLHDSFKDSIMQDIKDSRLGTRG
KYVYSCINFIMLKMMAENLMKQPMDQLLHNDFYSRLGAWHTTYNPLRRMDSLQIVPTEND
QFVRRQLLRGYVHDEAAAFQGGVSGNAGLFSNANDLAKVLQLFLNQGTYGNEQYLSAETC
RLFTQSKSPTSRRGLGFDKPAVGTHKGSPCSNLTPPSTYGHTGFTGTCFWVDPDNQLLYI
FLCNRVNPSRANNKLSALDIRTRIQDAIYKAIDRKSQKD

Enzyme Prediction     

EC	3.2.1.-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	101	326	8.4e-56	0.9768518518518519

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG1472	BglX	2.66e-71	45	431	1	368	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
pfam00933	Glyco_hydro_3	1.59e-69	46	360	1	314	Glycosyl hydrolase family 3 N terminal domain.
PRK03642	PRK03642	3.74e-60	570	992	28	431	putative periplasmic esterase; Provisional
pfam00144	Beta-lactamase	2.95e-40	585	968	1	311	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.
COG1680	AmpC	1.23e-35	572	987	28	385	CubicO group peptidase, beta-lactamase class C family [Defense mechanisms].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QUT21701.1	0.0	1	999	1	998
BBK92319.1	0.0	1	999	1	998
QIX64335.1	0.0	1	999	1	998
QJE31090.1	0.0	1	999	1	998
QCY58561.1	0.0	1	999	1	998

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3BMX_A	6.27e-64	27	569	22	632	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
4GYJ_A	3.32e-63	27	569	26	636	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
3LK6_A	4.56e-63	39	569	10	606	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
6K5J_A	1.90e-62	44	550	10	531	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
3SQL_A	5.40e-52	71	363	50	346	CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	3.43e-63	27	569	22	632	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
P48823	5.60e-50	71	413	55	426	Beta-hexosaminidase A OS=Pseudoalteromonas piscicida OX=43662 GN=cht60 PE=1 SV=1
P77619	4.85e-43	572	995	30	434	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli (strain K12) OX=83333 GN=yfeW PE=1 SV=2
Q8XBJ0	4.03e-42	572	995	30	434	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli O157:H7 OX=83334 GN=yfeW PE=3 SV=1
B5RCU8	7.29e-39	572	976	30	406	Putative D-alanyl-D-alanine carboxypeptidase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) OX=550538 GN=yfeW PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000331	0.998838	0.000329	0.000166	0.000158	0.000150

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003701_04734.