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CAZyme Information: MGYG000003687_00709

You are here: Home > Sequence: MGYG000003687_00709

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Paenibacillus polymyxa
Lineage Bacteria; Firmicutes; Bacilli; Paenibacillales; Paenibacillaceae; Paenibacillus; Paenibacillus polymyxa
CAZyme ID MGYG000003687_00709
CAZy Family PL1
CAZyme Description Pectin lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
345 MGYG000003687_2|CGC2 37874.36 9.4606
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003687 5656034 Isolate China Asia
Gene Location Start: 207863;  End: 208900  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003687_00709.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 83 274 1.3e-95 0.9948717948717949

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 2.18e-92 7 336 3 341
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 3.26e-50 88 277 3 190
Amb_all domain.
pfam00544 Pec_lyase_C 8.92e-46 93 273 26 211
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AIY10696.1 4.60e-249 1 345 1 345
AHM65164.1 4.60e-249 1 345 1 345
AZH28636.1 3.78e-248 1 345 1 345
QPK56488.1 7.63e-248 1 345 1 345
QPK51398.1 7.63e-248 1 345 1 345

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3VMV_A 2.89e-16 78 335 60 321
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]
1PCL_A 2.51e-14 54 345 18 354
ChainA, PECTATE LYASE E [Dickeya chrysanthemi]
1OOC_A 4.74e-14 54 336 24 358
ChainA, Pectate lyase A [Dickeya chrysanthemi],1OOC_B Chain B, Pectate lyase A [Dickeya chrysanthemi],1PE9_A Chain A, Pectate lyase A [Dickeya chrysanthemi],1PE9_B Chain B, Pectate lyase A [Dickeya chrysanthemi]
1JRG_A 8.59e-14 54 336 24 358
ChainA, Pectate lyase [Dickeya chrysanthemi],1JRG_B Chain B, Pectate lyase [Dickeya chrysanthemi],1JTA_A Chain A, pectate lyase A [Dickeya chrysanthemi]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P94449 1.78e-178 23 344 23 344
Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1
O34819 1.03e-177 25 344 25 344
Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1
P27027 6.78e-113 27 344 2 311
Pectin lyase OS=Pseudomonas marginalis OX=298 GN=pnl PE=1 SV=2
P24112 5.44e-105 28 343 3 312
Pectin lyase OS=Pectobacterium carotovorum OX=554 GN=pnl PE=1 SV=1
Q0CBV0 2.15e-20 54 256 46 239
Probable pectate lyase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000279 0.998992 0.000177 0.000190 0.000169 0.000163

TMHMM  Annotations      download full data without filtering help

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