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CAZyme Information: MGYG000003687_00227

You are here: Home > Sequence: MGYG000003687_00227

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Paenibacillus polymyxa
Lineage Bacteria; Firmicutes; Bacilli; Paenibacillales; Paenibacillaceae; Paenibacillus; Paenibacillus polymyxa
CAZyme ID MGYG000003687_00227
CAZy Family PL9
CAZyme Description Pectate lyase L
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
449 MGYG000003687_1|CGC5 47236.61 5.8213
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003687 5656034 Isolate China Asia
Gene Location Start: 214175;  End: 215524  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003687_00227.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL9 65 437 1.8e-137 0.9893333333333333

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam13229 Beta_helix 3.60e-07 153 345 2 157
Right handed beta helix region. This region contains a parallel beta helix region that shares some similarity with Pectate lyases.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AUS29210.1 0.0 1 449 1 449
AIY09257.1 0.0 1 449 1 449
AHM68546.1 0.0 1 449 1 449
QDA27104.1 0.0 1 449 1 449
QPK57964.1 0.0 1 449 1 449

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
1RU4_A 4.66e-59 69 446 18 385
ChainA, Pectate lyase [Dickeya chrysanthemi]
5OLQ_A 3.31e-19 69 352 6 322
Rhamnogalacturonanlyase [Bacteroides thetaiotaomicron],5OLQ_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLQ_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_B Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLR_C Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron],5OLS_A Rhamnogalacturonan lyase [Bacteroides thetaiotaomicron]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P0C1A6 2.28e-59 69 446 43 410
Pectate lyase L OS=Dickeya chrysanthemi OX=556 GN=pelL PE=3 SV=1
P0C1A7 4.73e-58 69 446 43 410
Pectate lyase L OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelL PE=1 SV=1
P22751 2.14e-47 65 368 388 665
Pectate disaccharide-lyase OS=Dickeya chrysanthemi OX=556 GN=pelX PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.001444 0.556149 0.440733 0.001099 0.000338 0.000213

TMHMM  Annotations      download full data without filtering help

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