CAZyme Information: MGYG000003572_01178

Basic Information

• Species: Prevotella sp900770025
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella sp900770025
• CAZyme ID: MGYG000003572_01178
• CAZy Family: PL11
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1502	MGYG000003572_65|CGC1	160557.32	4.8197

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003572	2050564	MAG	Fiji	Oceania

• Gene Location: Start: 12095; End: 16603 Strand: -

Full Sequence      

MKKLLFLLLVLVACNVDVQAQRQQTDKLDRGLVAVKTGTGVLCSWRITADEYYDVTYNIY
RDGAKLNTAPLSVSNYLDKSGSNSSSYTVEAVVRGVAQSKSAAVTPWVSNYKEIKMDHGT
LTGTFVPNDATAADLDGDGELELIIKFDNLNPGTDDCYTIIEAYKLSGKRLWWINCGRNM
GDFQNNEINIAAYDWDGDGKAECVMRAADGTVLHMSDGTTQTIGDASKNYRPAASGQWFV
HDGAEYLLYLDGLTAKPYQVLDYPLVRLEAGEGSLEAQWGDGYGHRSSKYFFGAPYFDGR
KPSIFLARGIYTRHKMIAYDVDPATHKLTERWKWNCSTAGSPWYGQGYHNYVVADVDWDG
RDEIVFGSMTIDDNGKGLATTGLGHGDSQHVCDFDPYRHGQEFFGCNEDNPGNNFCDATT
RKILYRYSAGKDDGRCAMGNFSNDFPGAQGVSARDPGLISSVAYKALEGATRTGLTDNMR
LYWDGDLCEECFNYVNGKNTEGAVYKYGKGVIATFSGSMTNNDTKGTPCLQADLFGDWRE
EVVMRTADNNVRIYTTNVETPWRNYTLWHDHQYRNAIVWQMNGYNQAPNVSYFLGELEGI
TVAPPSLTMQGRTEVVNNGSITTALNDKALIACETGDMTISVADGAAPYIFYDNAPSWVQ
GTDVNGSSGKNPTINYTYYIHTLTGGAFGGAMRLVKQGDGILALPAVTQTYTGNTDVWAG
TLQFDGTMQGSRVWLNRHTTLITNGGVFKKAVQADYNATIQLGTATAAGSITADSLLLGF
GSRVQIDLFSDGLQADKINANVLKIEKKVWNNGPQYDAPVISLVAHPADGSNKLAAGKYL
IGEVGKIEGSVDNVNLEGLTYQKSALAYEEGKLYVVITDYEAGNLTWKGALSNVWNSDNT
ANFTDEAGSASVVFVPGAAVLFNDEAVVTDIQVEGNVAPASITFDNSSKDFTLNGDSIIG
GITLNKQGTGSLTVNSVNHLGKVNVNAGKLCVNVLANNQGTDWGALGDVNTRINLADGAT
LTLGGGLVTDQTITVAQGDATIEVPASNTATLNKGVLAGGSNTVLTKTGGGALTLGTDNT
ISKLVIKGGVVNASESGDVTALPATVELRGGSLYDPSNEYTYTTNKANFVVPEGSTVSFY
LDCRCNYTGTLTGAGTLNVYAAGVRNYLNGNWSAFEGTVVPGLQKRGSNYDPVFYFNNTY
GLPNATLKLNTGVTVDNNGKNFPVGKVSGSGTLAGSGSYIFGTNDEDFSMTAPCTSSVIK
KGAGTMRVVTAGKITGSIIVEEGNFYFSGITSGTLFNGTKPITGNGSSVLLGQAYLTSLT
INSGSTLKPRATLSETSAGTIIATGTIAVNEGATLDMLLSASKQSKLQGKWVSVKGILKI
TLAEGYTPAAGDSFTLWEATNSFSGTPTFDLPVLPDNLAWDTSELLAATGVLKVVVGSGI
KAIAPDATVQCEVYTTNGQKVAQFEAPKNKVEENLQTVSSDNRTLIVRMVAGNRMEVKKV
IR

Enzyme Prediction     

No EC number prediction in MGYG000003572_01178.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL11	24	596	3.2e-160	0.9759862778730704

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd10318	RGL11	5.75e-173	26	592	2	564	Rhamnogalacturonan lyase of the polysaccharide lyase family 11. The rhamnogalacturonan lyase of the polysaccharide lyase family 11 (RGL11) cleaves glycoside bonds in polygalacturonan as well as RG (rhamnogalacturonan) type-I through a beta-elimination reaction. Functionally characterized members of this family, YesW and YesX from Bacillus subtilis, cleave glycoside bonds between rhamnose and galacturonic acid residues in the RG-I region of plant cell wall pectin. YesW and YesX work synergistically, with YesW cleaving the glycoside bond of the RG chain endolytically, and YesX converting the resultant oligosaccharides through an exotype reaction. This domain is sometimes found in architectures with non-catalytic carbohydrate-binding modules (CBMs). There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain through a beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11.
pfam18370	RGI_lyase	6.55e-37	24	107	2	86	Rhamnogalacturonan I lyases beta-sheet domain. This is the beta-sheet domain found in rhamnogalacturonan (RG) lyases, which are responsible for an initial cleavage of the RG type I (RG-I) region of plant cell wall pectin. Polysaccharide lyase family 11 carrying this domain, such as YesW (EC:4.2.2.23) and YesX (EC:4.2.2.24), cleave glycoside bonds between rhamnose and galacturonic acid residues in RG-I through a beta-elimination reaction. Other family members carrying this domain are hemagglutinin A, lysine gingipain (Kgp) and Chitinase C (EC:3.2.1.14).
PRK15319	PRK15319	9.00e-05	908	1390	661	1133	fibronectin-binding autotransporter adhesin ShdA.
PRK15319	PRK15319	5.45e-04	950	1432	886	1402	fibronectin-binding autotransporter adhesin ShdA.
NF033177	auto_Ag43	0.001	981	1089	422	541	autotransporter adhesin Ag43.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QIM09959.1	0.0	20	1489	10	1528
AGB29439.1	0.0	2	1492	3	1512
BCS86257.1	3.07e-290	25	877	2	866
QJC87652.1	2.00e-129	5	596	14	601
QYX44216.1	2.40e-129	5	596	20	607

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
2Z8R_A	9.13e-127	23	596	3	570	Crystalstructure of rhamnogalacturonan lyase YesW at 1.40 A resolution [Bacillus subtilis],2Z8R_B Crystal structure of rhamnogalacturonan lyase YesW at 1.40 A resolution [Bacillus subtilis],2Z8S_A Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid [Bacillus subtilis],2Z8S_B Crystal structure of rhamnogalacturonan lyase YesW complexed with digalacturonic acid [Bacillus subtilis],2ZUX_A Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose [Bacillus subtilis],2ZUX_B Crystal structure of rhamnogalacturonan lyase YesW complexed with rhamnose [Bacillus subtilis]
4CAG_A	2.06e-116	20	596	6	577	Bacilluslicheniformis Rhamnogalacturonan Lyase PL11 [Bacillus licheniformis]
2ZUY_A	1.14e-110	21	595	4	590	Crystalstructure of exotype rhamnogalacturonan lyase YesX [Bacillus subtilis]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
O31526	4.60e-127	14	596	31	607	Rhamnogalacturonan endolyase YesW OS=Bacillus subtilis (strain 168) OX=224308 GN=yesW PE=1 SV=1
O31527	4.98e-110	21	595	4	590	Rhamnogalacturonan exolyase YesX OS=Bacillus subtilis (strain 168) OX=224308 GN=yesX PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000338	0.992774	0.006259	0.000215	0.000196	0.000183

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003572_01178.