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CAZyme Information: MGYG000003546_00065
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | UBA1181 sp900769555 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Paludibacteraceae; UBA1181; UBA1181 sp900769555 | |||||||||||
| CAZyme ID | MGYG000003546_00065 | |||||||||||
| CAZy Family | GH8 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 59599; End: 62904 Strand: + | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| COG3405 | BcsZ | 2.43e-54 | 599 | 975 | 1 | 353 | Endo-1,4-beta-D-glucanase Y [Carbohydrate transport and metabolism]. |
| cd10967 | CE4_GLA_like_6s | 5.67e-28 | 33 | 223 | 1 | 202 | Putative catalytic NodB homology domain of gellan lyase and similar proteins. This family is represented by the extracellular polysaccharide-degrading enzyme, gellan lyase (gellanase, EC 4.2.2.-), from Bacillus sp. The enzyme acts on gellan exolytically and releases a tetrasaccharide of glucuronyl-glucosyl-rhamnosyl-glucose with unsaturated glucuronic acid at the nonreducing terminus. The family also includes many uncharacterized prokaryotic polysaccharide deacetylases, which show high sequence similarity to Bacillus sp. gellan lyase. Although their biological functions remain unknown, all members of the family contain a conserved domain with a 6-stranded beta/alpha barrel, which is similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, belonging to the larger carbohydrate esterase 4 (CE4) superfamily. |
| pfam01270 | Glyco_hydro_8 | 3.47e-21 | 651 | 964 | 22 | 317 | Glycosyl hydrolases family 8. |
| cd10970 | CE4_DAC_u1_6s | 1.64e-19 | 34 | 197 | 2 | 175 | Putative catalytic NodB homology domain of uncharacterized prokaryotic polysaccharide deacetylases which consist of a 6-stranded beta/alpha barrel. This family contains uncharacterized prokaryotic polysaccharide deacetylases. Although their biological functions remain unknown, all members of the family contain a conserved domain with a 6-stranded beta/alpha barrel, which is similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, belonging to the larger carbohydrate esterase 4 (CE4) superfamily. |
| cd10918 | CE4_NodB_like_5s_6s | 7.20e-14 | 38 | 126 | 5 | 113 | Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes bacterial poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, hemin storage system HmsF protein in gram-negative species, intercellular adhesion proteins IcaB, and many uncharacterized prokaryotic polysaccharide deacetylases. It also includes a putative polysaccharide deacetylase YxkH encoded by the Bacillus subtilis yxkH gene, which is one of six polysaccharide deacetylase gene homologs present in the Bacillus subtilis genome. Sequence comparison shows all family members contain a conserved domain similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, which consists of a deformed (beta/alpha)8 barrel fold with 6 or 7 strands. However, in this family, most proteins have 5 strands and some have 6 strands. Moreover, long insertions are found in many family members, whose function remains unknown. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| ABG58512.1 | 1.17e-175 | 21 | 975 | 29 | 814 |
| QDO71566.1 | 1.51e-150 | 592 | 974 | 33 | 417 |
| EDV05067.1 | 1.56e-150 | 599 | 974 | 41 | 418 |
| QUT92907.1 | 5.89e-150 | 592 | 974 | 33 | 417 |
| ALJ61523.1 | 3.24e-149 | 592 | 974 | 33 | 417 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6G00_A | 3.33e-90 | 599 | 978 | 5 | 399 | CrystalStructure of a GH8 xylanase from Teredinibacter turnerae [Teredinibacter turnerae T7901],6G09_A Crystal Structure of a GH8 xylobiose complex from Teredinibacter turnerae [Teredinibacter turnerae T7901],6G0B_A Crystal Structure of a GH8 xylotriose complex from Teredinibacter Turnerae [Teredinibacter turnerae T7901] |
| 6G0N_A | 1.71e-89 | 599 | 978 | 5 | 399 | CrystalStructure of a GH8 catalytic mutant xylohexaose complex xylanase from Teredinibacter turnerae [Teredinibacter turnerae T7901] |
| 1WU4_A | 1.42e-85 | 599 | 981 | 7 | 387 | ChainA, xylanase Y [Halalkalibacterium halodurans C-125],1WU5_A Chain A, xylanase Y [Halalkalibacterium halodurans C-125] |
| 5YXT_A | 2.46e-85 | 596 | 978 | 3 | 381 | Glycosidehydrolase family 8 Xylanase [Paenibacillus barengoltzii G22],5YXT_B Glycoside hydrolase family 8 Xylanase [Paenibacillus barengoltzii G22],5YXT_C Glycoside hydrolase family 8 Xylanase [Paenibacillus barengoltzii G22],5YXT_D Glycoside hydrolase family 8 Xylanase [Paenibacillus barengoltzii G22] |
| 3A3V_A | 5.21e-85 | 599 | 981 | 7 | 387 | ChainA, Xylanase Y [Halalkalibacterium halodurans] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| Q9KB30 | 6.10e-85 | 599 | 981 | 7 | 387 | Reducing end xylose-releasing exo-oligoxylanase OS=Alkalihalobacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) OX=272558 GN=BH2105 PE=1 SV=1 |
| A0A0S2UQQ5 | 1.32e-77 | 594 | 973 | 2 | 380 | Reducing-end xylose-releasing exo-oligoxylanase Rex8A OS=Paenibacillus barcinonensis OX=198119 GN=rex8A PE=1 SV=1 |
| A1A048 | 6.67e-60 | 608 | 971 | 14 | 377 | Reducing end xylose-releasing exo-oligoxylanase OS=Bifidobacterium adolescentis (strain ATCC 15703 / DSM 20083 / NCTC 11814 / E194a) OX=367928 GN=xylA PE=1 SV=1 |
| P37699 | 1.74e-27 | 656 | 970 | 93 | 389 | Endoglucanase C OS=Ruminiclostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) OX=394503 GN=celCCC PE=1 SV=2 |
| P37701 | 1.01e-26 | 656 | 970 | 93 | 389 | Endoglucanase 2 OS=Ruminiclostridium josui OX=1499 GN=celB PE=3 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000395 | 0.998708 | 0.000214 | 0.000239 | 0.000217 | 0.000195 |