CAZyme Information: MGYG000003520_00928

Basic Information

• Species: RC9 sp900769145
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; UBA932; RC9; RC9 sp900769145
• CAZyme ID: MGYG000003520_00928
• CAZy Family: GH0
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
664	MGYG000003520_97|CGC1	74529.02	5.6003

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003520	2768956	MAG	Fiji	Oceania

• Gene Location: Start: 1887; End: 3881 Strand: -

Full Sequence      

MKRMFVTALLSVLALTLPSLKSMAEEQPNEHVKKVHVIFKTHLDIGFTALSSKVEQRYID
DFIPKAIEAARLLREEGAEERYVWTTGSWLVDSYLRQASPEAVRELEDAIERGDIVWNGV
PYTFESEAVSKDIFATTLKLAKQLDRRFGKKTIAAKMTDVPGHTRSIVPVLADAGISFLQ
IGVNSAATVPAVPPVCIWRDPSGREVILMYQKTYGEDMILPDGKTAVSINFTNDNKGPHT
VQQIKDIYAKLHQRYPNAVIEASSLNHVAGNLEGMKELMPVLTSEIGDTWIYGYGSSPLR
MAKYRELSRLYSKWLAEGKLDADSNTAIDFAVRLGMIGEHTWGSDVKVFLKHWDIYDFDK
FSASRDMEEFRYMELSWKELDDNIDKAIAILPENLRKEALDAVASIDCPERIIVRGNAKK
STLTDKGQYELKAGDMVCLFGGLAYQTFSQEDYTRFHNAYLTRKVKWALEDNGKPGLENS
SAKSVTVEAEVVKTGVKANVQTAELAFPETSEIDSRVLPESVKVEYRLSDDGKSVDMRLN
LENKPANRLPEAYWLSFKPENLIGVIAEKTGSRVDLMNVVTGGNRQMHGIDNCVDLITSA
GTFRVTSKDALLLAVGERNALNYSPALPDLSEGVHFCLFNNLWGTNFSMWWEGSISYRFR
IEIL

Enzyme Prediction     

No EC number prediction in MGYG000003520_00928.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd10791	GH38N_AMII_like_1	2.78e-78	34	291	1	253	N-terminal catalytic domain of mainly uncharacterized eukaryotic proteins similar to alpha-mannosidases; glycoside hydrolase family 38 (GH38). The subfamily of mainly uncharacterized eukaryotic proteins shows sequence homology with class II alpha-mannosidases (AlphaAMIIs). AlphaAMIIs possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyze the degradation of N-linked oligosaccharides. The N-terminal catalytic domain of alphaMII adopts a structure consisting of parallel 7-stranded beta/alpha barrel. This subfamily belongs to the GH38 family of retaining glycosyl hydrolases, which employ a two-step mechanism involving the formation of a covalent glycosyl enzyme complex; two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst.
pfam16477	DUF5054	8.58e-32	295	479	2	231	Domain of unknown function (DUF5054). This family consists of Glycosyl hydrolase family 38 proteins around 700 residues in length and is mainly found in various Clostridium and Rhizobium species. The function of this family is unknown.
cd10786	GH38N_AMII_like	8.47e-17	34	260	1	222	N-terminal catalytic domain of class II alpha-mannosidases and similar proteins; glycoside hydrolase family 38 (GH38). Alpha-mannosidases (EC 3.2.1.24) are extensively found in eukaryotes and play important roles in the processing of newly formed N-glycans and in degradation of mature glycoproteins. A deficiency of this enzyme causes the lysosomal storage disease alpha-mannosidosis. Many bacterial and archaeal species also possess putative alpha-mannosidases, but their activity and specificity is largely unknown. Based on different functional characteristics and sequence homology, alpha-mannosidases have been organized into two classes (class I, belonging to glycoside hydrolase family 47, and class II, belonging to glycoside hydrolase family 38). Members of this family corresponds to class II alpha-mannosidases (alphaMII), which contain intermediate Golgi alpha-mannosidases II, acidic lysosomal alpha-mannosidases, animal sperm and epididymal alpha -mannosidases, neutral ER/cytosolic alpha-mannosidases, and some putative prokaryotic alpha-mannosidases. AlphaMII possess a-1,3, a-1,6, and a-1,2 hydrolytic activity, and catalyzes the degradation of N-linked oligosaccharides. The N-terminal catalytic domain of alphaMII adopts a structure consisting of parallel 7-stranded beta/alpha barrel. Members in this family are retaining glycosyl hydrolases of family GH38 that employs a two-step mechanism involving the formation of a covalent glycosyl enzyme complex. Two carboxylic acids positioned within the active site act in concert: one as a catalytic nucleophile and the other as a general acid/base catalyst.
pfam01074	Glyco_hydro_38	0.005	34	218	1	187	Glycosyl hydrolases family 38 N-terminal domain. Glycosyl hydrolases are key enzymes of carbohydrate metabolism.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QYO77724.1	6.68e-133	35	663	6	637
QYG92602.1	3.53e-128	30	662	2	689
AUS95533.1	8.22e-66	35	661	7	739
AIA19246.1	2.23e-51	32	662	5	716
QEC73803.1	1.34e-47	5	661	23	785

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000227	0.999013	0.000217	0.000181	0.000176	0.000143

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003520_00928.