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CAZyme Information: MGYG000003496_01320

You are here: Home > Sequence: MGYG000003496_01320

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species CAG-115 sp900768705
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; CAG-115; CAG-115 sp900768705
CAZyme ID MGYG000003496_01320
CAZy Family GH23
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1410 161096.32 5.0785
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003496 2237307 MAG Fiji Oceania
Gene Location Start: 98;  End: 4330  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003496_01320.

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG4646 COG4646 8.53e-76 115 642 1 540
Adenine-specific DNA methylase, N12 class [Replication, recombination and repair].
COG4646 COG4646 4.89e-28 783 972 439 635
Adenine-specific DNA methylase, N12 class [Replication, recombination and repair].
smart00487 DEXDc 4.36e-11 586 689 7 110
DEAD-like helicases superfamily.
cd18011 DEXDc_RapA 1.51e-09 588 692 1 103
DEXH-box helicase domain of RapA. In bacteria, RapA is an RNA polymerase (RNAP)-associated SWI2/SNF2 (switch/sucrose non-fermentable) protein that mediates RNAP recycling during transcription. The ATPase activity of RapA is stimulated by its interaction with RNAP and inhibited by its N-terminal domain. The conformational changes of RapA and its interaction with RNAP are essential for RNAP recycling. RapA is part of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
pfam04851 ResIII 1.38e-08 585 674 1 100
Type III restriction enzyme, res subunit.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ASV45029.1 6.11e-288 2 1339 1736 3150
QIW86704.1 1.36e-287 2 1345 1804 3224
QIW86628.1 1.36e-287 2 1345 1804 3224
AEY69616.1 1.10e-272 2 1328 1877 3283
AXF51455.1 2.37e-271 2 1358 1970 3395

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q71TF8 2.27e-20 526 1159 769 1567
Defense against restriction protein B OS=Escherichia phage P1 OX=2886926 GN=darB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000039 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003496_01320.