logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000003383_01489

You are here: Home > Sequence: MGYG000003383_01489

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Bifidobacterium scardovii
Lineage Bacteria; Actinobacteriota; Actinomycetia; Actinomycetales; Bifidobacteriaceae; Bifidobacterium; Bifidobacterium scardovii
CAZyme ID MGYG000003383_01489
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
516 MGYG000003383_19|CGC4 56915.75 4.7544
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003383 3123324 MAG United States North America
Gene Location Start: 148094;  End: 149644  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003383_01489.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 233 489 1.8e-38 0.7261538461538461

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 5.93e-11 142 370 136 344
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 7.71e-08 263 468 88 283
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02793 PLN02793 4.20e-04 269 353 186 265
Probable polygalacturonase
PLN03010 PLN03010 6.47e-04 270 351 167 243
polygalacturonase
PLN03003 PLN03003 0.002 270 370 148 241
Probable polygalacturonase At3g15720

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BAQ31010.1 0.0 66 516 1 451
QFR24556.1 7.18e-160 15 505 7 463
QEU47473.1 7.60e-157 15 505 7 463
AIQ48556.1 1.41e-145 17 493 6 456
AIQ54052.1 1.60e-144 17 493 6 456

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q7M1E7 2.37e-07 261 370 184 286
Polygalacturonase OS=Chamaecyparis obtusa OX=13415 PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000032 0.000006 0.000001 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003383_01489.