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CAZyme Information: MGYG000003382_02690

You are here: Home > Sequence: MGYG000003382_02690

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Pantoea agglomerans
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Pantoea; Pantoea agglomerans
CAZyme ID MGYG000003382_02690
CAZy Family GT4
CAZyme Description Glycosyltransferase Gtf1
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
407 MGYG000003382_27|CGC1 45461.66 6.5812
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003382 4723531 MAG United States North America
Gene Location Start: 25174;  End: 26397  Strand: +

Full Sequence      Download help

MKLTFFTMRF  PVASETFVLN  QVTHFIDAGY  EVEIISVFPG  DLVNRHAAFD  EYGLAAKTHY60
LLPEEKVSIV  DKLNQRIKLV  LPKVTKPSLL  RSLNVRRYGA  QSSKLLLPSI  VANAKQTFTA120
DVFLVHFGYA  GALANKLREL  GVLKGKQATV  FHGADISRRH  ILEEHKLDYV  NLFRQSELML180
PISNLWKNKL  IEMGCPPEKI  HVTRMGIEPE  KFNFQPRQAF  QTPLRIVSVA  RLTEKKGLDV240
AVKASAILKQ  RGGQFQYTII  GNGDQDEMMR  NFIAREGMED  CVSMPGFKPQ  EEIRRALSEA300
DIFLLPSKTA  ADGDMEGIPV  ALMEAMAVGL  PVVSTFHSGI  PELIENNVSG  WLVEEDDPEA360
LAETLLKLSQ  GEVDVAPVVA  AARHKVETEF  NQHIAYGELA  QILERLV407

Enzyme Prediction      help

No EC number prediction in MGYG000003382_02690.

CAZyme Signature Domains help

Created with Snap20406181101122142162183203223244264284305325345366386226371GT4
Family Start End Evalue family coverage
GT4 226 371 3.5e-35 0.86875

CDD Domains      download full data without filtering help

Created with Snap204061811011221421621832032232442642843053253453663861406PRK154271406wcaL2399GT4_AmsK-like6368GT4-like2404GT4_PimA-like
Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
PRK15427 PRK15427 0.0 1 406 1 406
colanic acid biosynthesis glycosyltransferase WcaL; Provisional
TIGR04005 wcaL 6.36e-170 1 406 1 406
colanic acid biosynthesis glycosyltransferase WcaL. This gene is one of the glycosyl transferases involved in the biosynthesis of colanic acid, an exopolysaccharide expressed in Enterobacteraceae species.
cd03799 GT4_AmsK-like 7.37e-158 2 399 1 350
Erwinia amylovora AmsK and similar proteins. This is a family of GT4 glycosyltransferases found specifically in certain bacteria. AmsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
cd05844 GT4-like 4.28e-48 6 368 5 331
glycosyltransferase family 4 proteins. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to glycosyltransferase family 4 (GT4). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
cd03801 GT4_PimA-like 4.75e-42 2 404 1 366
phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.

CAZyme Hits      help

Created with Snap204061811011221421621832032232442642843053253453663861407QTC51803.1|GT41407AOE41822.1|GT41407QIA52017.1|GT41407AYP22692.1|GT41407QAV45197.1|GT4
Hit ID E-Value Query Start Query End Hit Start Hit End
QTC51803.1 4.63e-294 1 407 1 407
AOE41822.1 4.63e-294 1 407 1 407
QIA52017.1 3.80e-293 1 407 1 407
AYP22692.1 3.80e-293 1 407 1 407
QAV45197.1 3.80e-293 1 407 1 407

PDB Hits      download full data without filtering help

Created with Snap204061811011221421621832032232442642843053253453663862224043OKA_A2224043OKC_A1054025D00_A1053912JJM_A1053913MBO_A
Hit ID E-Value Query Start Query End Hit Start Hit End Description
3OKA_A 7.95e-16 222 404 198 377
Crystalstructure of Corynebacterium glutamicum PimB' in complex with GDP-Man (triclinic crystal form) [Corynebacterium glutamicum],3OKA_B Crystal structure of Corynebacterium glutamicum PimB' in complex with GDP-Man (triclinic crystal form) [Corynebacterium glutamicum]
3OKC_A 8.62e-16 222 404 198 377
Crystalstructure of Corynebacterium glutamicum PimB' bound to GDP (orthorhombic crystal form) [Corynebacterium glutamicum],3OKP_A Crystal structure of Corynebacterium glutamicum PimB' bound to GDP-Man (orthorhombic crystal form) [Corynebacterium glutamicum]
5D00_A 9.04e-12 105 402 75 371
Crystalstructure of BshA from B. subtilis complexed with N-acetylglucosaminyl-malate and UMP [Bacillus subtilis subsp. subtilis str. 168],5D00_B Crystal structure of BshA from B. subtilis complexed with N-acetylglucosaminyl-malate and UMP [Bacillus subtilis subsp. subtilis str. 168],5D01_A Crystal structure of BshA from B. subtilis complexed with N-acetylglucosaminyl-malate [Bacillus subtilis subsp. subtilis str. 168],5D01_B Crystal structure of BshA from B. subtilis complexed with N-acetylglucosaminyl-malate [Bacillus subtilis subsp. subtilis str. 168]
2JJM_A 1.69e-09 105 391 85 370
CrystalStructure of a family GT4 glycosyltransferase from Bacillus anthracis ORF BA1558. [Bacillus anthracis str. Ames],2JJM_B Crystal Structure of a family GT4 glycosyltransferase from Bacillus anthracis ORF BA1558. [Bacillus anthracis str. Ames],2JJM_C Crystal Structure of a family GT4 glycosyltransferase from Bacillus anthracis ORF BA1558. [Bacillus anthracis str. Ames],2JJM_D Crystal Structure of a family GT4 glycosyltransferase from Bacillus anthracis ORF BA1558. [Bacillus anthracis str. Ames],2JJM_E Crystal Structure of a family GT4 glycosyltransferase from Bacillus anthracis ORF BA1558. [Bacillus anthracis str. Ames],2JJM_F Crystal Structure of a family GT4 glycosyltransferase from Bacillus anthracis ORF BA1558. [Bacillus anthracis str. Ames],2JJM_G Crystal Structure of a family GT4 glycosyltransferase from Bacillus anthracis ORF BA1558. [Bacillus anthracis str. Ames],2JJM_H Crystal Structure of a family GT4 glycosyltransferase from Bacillus anthracis ORF BA1558. [Bacillus anthracis str. Ames],2JJM_I Crystal Structure of a family GT4 glycosyltransferase from Bacillus anthracis ORF BA1558. [Bacillus anthracis str. Ames],2JJM_J Crystal Structure of a family GT4 glycosyltransferase from Bacillus anthracis ORF BA1558. [Bacillus anthracis str. Ames],2JJM_K Crystal Structure of a family GT4 glycosyltransferase from Bacillus anthracis ORF BA1558. [Bacillus anthracis str. Ames],2JJM_L Crystal Structure of a family GT4 glycosyltransferase from Bacillus anthracis ORF BA1558. [Bacillus anthracis str. Ames]
3MBO_A 1.79e-09 105 391 105 390
CrystalStructure of the Glycosyltransferase BaBshA bound with UDP and L-malate [Bacillus anthracis],3MBO_B Crystal Structure of the Glycosyltransferase BaBshA bound with UDP and L-malate [Bacillus anthracis],3MBO_C Crystal Structure of the Glycosyltransferase BaBshA bound with UDP and L-malate [Bacillus anthracis],3MBO_D Crystal Structure of the Glycosyltransferase BaBshA bound with UDP and L-malate [Bacillus anthracis],3MBO_E Crystal Structure of the Glycosyltransferase BaBshA bound with UDP and L-malate [Bacillus anthracis],3MBO_F Crystal Structure of the Glycosyltransferase BaBshA bound with UDP and L-malate [Bacillus anthracis],3MBO_G Crystal Structure of the Glycosyltransferase BaBshA bound with UDP and L-malate [Bacillus anthracis],3MBO_H Crystal Structure of the Glycosyltransferase BaBshA bound with UDP and L-malate [Bacillus anthracis]

Swiss-Prot Hits      download full data without filtering help

Created with Snap204061811011221421621832032232442642843053253453663861406sp|Q46638|AMSK_ERWAM1406sp|P71243|WCAL_ECOLI1406sp|P26388|WCAL_SALTY182403sp|P9WMZ3|PIMB_MYCTU182403sp|P9WMZ2|PIMB_MYCTO
Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q46638 3.46e-214 1 406 1 406
Amylovoran biosynthesis glycosyltransferase AmsK OS=Erwinia amylovora OX=552 GN=amsK PE=3 SV=2
P71243 8.79e-145 1 406 1 406
Putative colanic acid biosynthesis glycosyltransferase WcaL OS=Escherichia coli (strain K12) OX=83333 GN=wcaL PE=3 SV=2
P26388 1.01e-138 1 406 1 406
Putative colanic acid biosynthesis glycosyltransferase WcaL OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) OX=99287 GN=wcaL PE=3 SV=1
P9WMZ3 1.37e-15 182 403 148 378
GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=pimB PE=1 SV=1
P9WMZ2 1.37e-15 182 403 148 378
GDP-mannose-dependent alpha-(1-6)-phosphatidylinositol monomannoside mannosyltransferase OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=pimB PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000038 0.000007 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003382_02690.