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CAZyme Information: MGYG000003377_04079

You are here: Home > Sequence: MGYG000003377_04079

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phytobacter sp002377245
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Phytobacter; Phytobacter sp002377245
CAZyme ID MGYG000003377_04079
CAZy Family PL22
CAZyme Description Oligogalacturonate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
391 MGYG000003377_92|CGC2 44631.8 4.9809
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003377 5122475 MAG United States North America
Gene Location Start: 198525;  End: 199700  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.6

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL22 215 385 5.9e-81 0.6415094339622641
PL22 32 137 3.1e-32 0.3886792452830189

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam14583 Pectate_lyase22 0.0 1 385 1 385
Oligogalacturonate lyase. This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers.
COG0823 TolB 1.26e-31 15 367 72 407
Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport].
PRK01029 tolB 8.50e-11 218 386 167 316
Tol-Pal system protein TolB.
PRK04792 tolB 8.41e-08 245 378 225 333
Tol-Pal system protein TolB.
PRK00178 tolB 1.96e-06 245 391 206 328
Tol-Pal system protein TolB.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QCZ26411.1 5.38e-294 1 390 1 390
QVV61373.1 7.64e-294 1 390 1 390
QDK17817.1 1.09e-293 1 390 1 390
QGU12139.1 2.19e-293 1 390 1 390
QIK15341.1 3.11e-293 1 390 1 390

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3PE7_A 1.03e-209 1 384 1 384
Oligogalacturonatelyase in complex with manganese [Yersinia enterocolitica subsp. enterocolitica 8081]
3C5M_A 1.74e-191 2 384 2 384
Crystalstructure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_B Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_C Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P21258 6.22e-206 1 384 1 384
Oligogalacturonate lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=ogl PE=2 SV=2
Q59418 1.46e-204 1 384 1 384
Oligogalacturonide lyase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=ogl PE=4 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000061 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003377_04079.