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CAZyme Information: MGYG000003371.1_00844

You are here: Home > Sequence: MGYG000003371.1_00844

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species
Lineage Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas;
CAZyme ID MGYG000003371.1_00844
CAZy Family PL17
CAZyme Description Alginate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
524 MGYG000003371.1_387|CGC1 57292.74 7.0872
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003371.1 3702384 MAG United States North America
Gene Location Start: 69;  End: 1643  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.- 4.2.2.3

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL17 175 310 9.5e-50 0.9640287769784173

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam07940 Hepar_II_III 5.38e-24 175 437 12 228
Heparinase II/III-like protein. This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II and heparinase III. The former is known to degrade heparin and heparin sulphate, whereas the latter predominantly degrades heparin sulphate. Both are secreted into the periplasmic space upon induction with heparin.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
AEL31264.1 0.0 1 524 208 731
AEM45874.1 0.0 1 524 208 731
ATY33966.1 0.0 1 523 209 731
QNA85399.1 2.50e-262 1 520 206 724
QNQ10803.1 7.14e-262 1 520 206 724

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4NEI_A 6.28e-168 1 513 212 727
Alg17cPL17 Family Alginate Lyase [Saccharophagus degradans 2-40],4NEI_B Alg17c PL17 Family Alginate Lyase [Saccharophagus degradans 2-40]
4OK4_A 6.28e-168 1 513 212 727
CrystalStructure of Alg17c Mutant H202L [Saccharophagus degradans 2-40],4OK4_B Crystal Structure of Alg17c Mutant H202L [Saccharophagus degradans 2-40]
4OJZ_A 1.42e-166 1 513 212 727
CrystalStructure of Alg17c Mutant Y258A Complexed with Alginate Trisaccharide [Saccharophagus degradans 2-40],4OJZ_B Crystal Structure of Alg17c Mutant Y258A Complexed with Alginate Trisaccharide [Saccharophagus degradans 2-40],4OK2_A Crystal Structure of Alg17c Mutant Y258A [Saccharophagus degradans 2-40],4OK2_B Crystal Structure of Alg17c Mutant Y258A [Saccharophagus degradans 2-40]
7BJT_A 2.07e-126 1 515 210 745
ChainA, Alginate lyase, family PL17 [Zobellia galactanivorans],7BJT_B Chain B, Alginate lyase, family PL17 [Zobellia galactanivorans]
7BM6_A 4.52e-125 1 515 210 745
ChainA, Alginate lyase, family PL17 [Zobellia galactanivorans],7BM6_B Chain B, Alginate lyase, family PL17 [Zobellia galactanivorans]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
B2FSW8 2.37e-188 1 524 218 740
Alginate lyase OS=Stenotrophomonas maltophilia (strain K279a) OX=522373 GN=Smlt2602 PE=1 SV=1
Q21FJ0 3.44e-167 1 513 212 727
Exo-oligoalginate lyase OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) OX=203122 GN=alg17C PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000062 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003371.1_00844.