CAZyme Information: MGYG000003367_02209

Basic Information

• Species: Bacteroides sp007896885
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides sp007896885
• CAZyme ID: MGYG000003367_02209
• CAZy Family: GH3
• CAZyme Description: Beta-hexosaminidase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1035	MGYG000003367_59|CGC2	115719.44	9.9752

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003367	3747359	MAG	United States	North America

• Gene Location: Start: 36326; End: 39433 Strand: +

Full Sequence      

MKRLLVFIIILLTGCTRFALEAKRLPSPPPPVPPVEPFMLQRAEKDKRCVQWVDSVFNKM
SLKERIGQLLIYTIAPQKTKKNRELLRKVVEEYKVGGLLFSGGLMLNQAMLTNEAQRMAK
VPLMITFDGEWGLSMRLRGTPVFPKNMVLGCIQDDKLIYAYGREMARQCRELGIRVNFAP
VADVNINPRNPVINTRSFGESPVSVADKVISYAKGLEDGGVLSVCKHFPGHGDTDVDSHK
ALPTLPFTRERLDSIELYPFKKAIKAGLSGIMVGHLEVPIFEEHVGLPSSLSRNVVYDLL
SRELHFKGLIFTDALSMKGVSGNEMVCLKALKAGNDMLLVPDRLKEEVQSVVDAIKSGDM
EEEDINRRCRKVLTYKYVLGLRKRPQIHLSGLGSRVNTPHTKDLIRRLNLAAVTVLGNQQ
GILPLSTDIKQLAVLNVGDNKIIKPFFKELSEYTHPVGFQLGKSLSEAERINLKETLSHY
KRIIVCVTDHRLAPYQTFFADFAPKVPVVYVFFIPGKQILQIHRGVSAADAVVLAHSPGE
DIQKHVAKVLYADVTANGRLSASIGGLFATGDGMTLSPETPHRFIPEEYGMNSRLLSRID
TIATEGIRKGAYPGCQIAIFKNGKELYNKAFGAHTWAKGSVAASAGASALMLNVPVPVKK
TDVYDLASLTKTTATLLAVMKLYDKGALNLTDRASDYLSYLKNTDKKNITVRELLLHESG
LPPTLLFYQDVIDKKSYKGSLFKAKRDKLYSVRVGAEVWANPNFRFRKGLTSNIRMAGYS
MQVCDSLWLNDSFKKEYLKKIANAPLKDKRYRYSDLNFILLQQIVEQRTGMSLNKFLERE
FYVPMGLSRTGYLPLSRQYGAFKKGLKSEIIPSNIDLFLRKELLQGFVHDEAAAFQGGVS
GNAGLFSNATEVASIYQMLLNNGEWKGKRYLSETTCRMFTTTVSNISRRGLGFDKPDTRH
HENSPCCISASASVYGHTGFTGTCAWVDPVNALVYVFLSNRIYPDAWNTKLQKLKIRERI
QEAMYQALSSPEAKR

Enzyme Prediction     

EC	3.2.1.-

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH3	115	340	3.2e-57	0.9861111111111112

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam00933	Glyco_hydro_3	1.19e-78	61	374	1	315	Glycosyl hydrolase family 3 N terminal domain.
COG1472	BglX	1.29e-76	60	435	1	360	Periplasmic beta-glucosidase and related glycosidases [Carbohydrate transport and metabolism].
PRK03642	PRK03642	6.62e-51	580	1001	26	395	putative periplasmic esterase; Provisional
COG1680	AmpC	2.68e-34	561	1005	1	367	CubicO group peptidase, beta-lactamase class C family [Defense mechanisms].
pfam00144	Beta-lactamase	4.31e-34	599	1006	1	313	Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QDO71487.1	0.0	1	1028	1	1048
QRQ48901.1	0.0	1	1028	1	1010
ADV42274.1	0.0	1	1030	1	998
QUT44551.1	0.0	1	1028	1	1010
AVM58797.1	0.0	1	1028	1	1010

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3BMX_A	3.90e-61	43	424	26	446	Beta-N-hexosaminidase(YbbD) from Bacillus subtilis [Bacillus subtilis],3BMX_B Beta-N-hexosaminidase (YbbD) from Bacillus subtilis [Bacillus subtilis],3NVD_A Structure of YBBD in complex with pugnac [Bacillus subtilis],3NVD_B Structure of YBBD in complex with pugnac [Bacillus subtilis]
4GYJ_A	2.02e-60	43	424	30	450	Crystalstructure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYJ_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1) [Bacillus subtilis subsp. subtilis str. 168],4GYK_A Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168],4GYK_B Crystal structure of mutant (D318N) bacillus subtilis family 3 glycoside hydrolase (nagz) in complex with glcnac-murnac (space group P1211) [Bacillus subtilis subsp. subtilis str. 168]
3LK6_A	2.81e-60	47	424	4	420	ChainA, Lipoprotein ybbD [Bacillus subtilis],3LK6_B Chain B, Lipoprotein ybbD [Bacillus subtilis],3LK6_C Chain C, Lipoprotein ybbD [Bacillus subtilis],3LK6_D Chain D, Lipoprotein ybbD [Bacillus subtilis]
6K5J_A	4.70e-60	56	564	5	531	Structureof a glycoside hydrolase family 3 beta-N-acetylglucosaminidase from Paenibacillus sp. str. FPU-7 [Paenibacillaceae]
3SQL_A	1.05e-49	92	401	55	371	CrystalStructure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQL_B Crystal Structure of Glycoside Hydrolase from Synechococcus [Synechococcus sp. PCC 7002],3SQM_A Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_B Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_C Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002],3SQM_D Crystal Structure of Glycoside Hydrolase from Synechococcus Complexed with N-acetyl-D-glucosamine [Synechococcus sp. PCC 7002]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P40406	2.14e-60	43	424	26	446	Beta-hexosaminidase OS=Bacillus subtilis (strain 168) OX=224308 GN=nagZ PE=1 SV=1
P48823	7.55e-44	86	425	55	425	Beta-hexosaminidase A OS=Pseudoalteromonas piscicida OX=43662 GN=cht60 PE=1 SV=1
P77619	8.87e-38	586	1001	30	395	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli (strain K12) OX=83333 GN=yfeW PE=1 SV=2
Q8XBJ0	1.20e-37	586	1001	30	395	Putative D-alanyl-D-alanine carboxypeptidase OS=Escherichia coli O157:H7 OX=83334 GN=yfeW PE=3 SV=1
Q7WUL3	3.83e-37	50	428	16	401	Beta-N-acetylglucosaminidase/beta-glucosidase OS=Cellulomonas fimi OX=1708 GN=nag3 PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as LIPO

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000000	0.000001	1.000033	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003367_02209.