logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000003364_00522

You are here: Home > Sequence: MGYG000003364_00522

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Collinsella sp900766165
Lineage Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; Collinsella; Collinsella sp900766165
CAZyme ID MGYG000003364_00522
CAZy Family GH106
CAZyme Description HTH-type transcriptional regulator MurR
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
1165 MGYG000003364_34|CGC1 126863.79 4.975
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003364 2070322 MAG United States North America
Gene Location Start: 17138;  End: 20635  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003364_00522.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH106 28 860 2.8e-65 0.9648058252427184

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG1737 RpiR 4.44e-40 882 1155 3 272
DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains [Transcription].
cd05013 SIS_RpiR 5.34e-20 1000 1139 1 139
RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
PRK11337 PRK11337 1.17e-19 892 1156 24 283
MurR/RpiR family transcriptional regulator.
PRK15482 PRK15482 1.36e-13 887 1079 6 199
HTH-type transcriptional regulator MurR.
pfam01418 HTH_6 3.28e-11 892 951 12 71
Helix-turn-helix domain, rpiR family. This domain contains a helix-turn-helix motif. The best characterized member of this family is RpiR, a regulator of the expression of rpiB gene.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ATP54541.1 0.0 13 866 4 855
AZH68834.1 0.0 1 861 1 863
QNM10672.1 4.35e-293 1 859 1 832
AGF57028.1 1.33e-234 6 860 5 846
APQ61832.1 2.88e-189 6 859 5 867

PDB Hits      help

has no PDB hit.

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q8RD36 2.23e-13 891 1155 12 271
Uncharacterized HTH-type transcriptional regulator TTE0211 OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) OX=273068 GN=TTE0211 PE=4 SV=1
P44540 2.76e-11 892 1138 16 261
Uncharacterized HTH-type transcriptional regulator HI_0143 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=HI_0143 PE=4 SV=2
Q1BYA7 7.78e-11 758 1136 248 590
Bifunctional protein glk OS=Burkholderia cenocepacia (strain AU 1054) OX=331271 GN=glk PE=3 SV=1
Q39IQ1 7.78e-11 758 1136 248 590
Bifunctional protein glk OS=Burkholderia lata (strain ATCC 17760 / DSM 23089 / LMG 22485 / NCIMB 9086 / R18194 / 383) OX=482957 GN=glk PE=3 SV=1
A8ADG3 8.86e-11 887 1079 6 199
HTH-type transcriptional regulator MurR OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) OX=290338 GN=murR PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000016 0.000012 0.000001 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003364_00522.