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CAZyme Information: MGYG000003358_01702

You are here: Home > Sequence: MGYG000003358_01702

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Kluyvera ascorbata
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Kluyvera; Kluyvera ascorbata
CAZyme ID MGYG000003358_01702
CAZy Family PL22
CAZyme Description Oligogalacturonate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
375 MGYG000003358_76|CGC2 43222.39 5.6731
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003358 4968008 MAG United States North America
Gene Location Start: 64884;  End: 66011  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.6

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL22 214 375 4.3e-59 0.630188679245283
PL22 32 138 2.4e-28 0.9811320754716981

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam14583 Pectate_lyase22 0.0 2 375 3 382
Oligogalacturonate lyase. This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers.
COG0823 TolB 2.56e-33 33 374 92 400
Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport].
PRK03629 tolB 6.63e-05 244 371 206 314
Tol-Pal system protein TolB.
PRK04922 tolB 1.24e-04 244 371 211 319
Tol-Pal system beta propeller repeat protein TolB.
PRK05137 tolB 4.78e-04 197 371 164 317
Tol-Pal system protein TolB.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
BBV64471.1 1.42e-299 1 375 1 375
BBQ82415.1 7.82e-288 1 375 1 375
BBR19454.1 7.82e-288 1 375 1 375
BBR57598.1 2.24e-287 1 375 1 375
BBT00420.1 2.24e-287 1 375 1 375

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3PE7_A 9.08e-202 2 375 3 382
Oligogalacturonatelyase in complex with manganese [Yersinia enterocolitica subsp. enterocolitica 8081]
3C5M_A 9.65e-180 2 375 3 382
Crystalstructure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_B Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_C Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P21258 1.50e-202 2 375 3 382
Oligogalacturonate lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=ogl PE=2 SV=2
Q59418 6.08e-202 2 375 3 382
Oligogalacturonide lyase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=ogl PE=4 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000072 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003358_01702.