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CAZyme Information: MGYG000003355_03657

You are here: Home > Sequence: MGYG000003355_03657

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Lachnoclostridium phytofermentans_A
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium; Lachnoclostridium phytofermentans_A
CAZyme ID MGYG000003355_03657
CAZy Family GH28
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
518 MGYG000003355_160|CGC1 57692.39 4.8697
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003355 5194070 MAG China Asia
Gene Location Start: 14808;  End: 16364  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003355_03657.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH28 225 496 5.9e-42 0.7630769230769231

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG5434 Pgu1 8.62e-11 221 351 178 336
Polygalacturonase [Carbohydrate transport and metabolism].
pfam00295 Glyco_hydro_28 5.15e-09 237 419 50 238
Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism.
PLN02793 PLN02793 3.97e-08 229 419 140 329
Probable polygalacturonase
PLN02218 PLN02218 1.09e-06 212 498 150 414
polygalacturonase ADPG
PLN02188 PLN02188 3.69e-04 238 415 122 344
polygalacturonase/glycoside hydrolase family protein

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ABX43664.1 0.0 1 518 1 518
BCK00431.1 1.36e-238 7 518 3 520
ACK41503.1 1.87e-145 39 508 27 475
ACI19833.1 1.05e-144 39 508 27 475
QTE67472.1 1.42e-134 45 508 33 478

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3JUR_A 4.54e-06 231 342 116 270
Thecrystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_B The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_C The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima],3JUR_D The crystal structure of a hyperthermoactive Exopolygalacturonase from Thermotoga maritima [Thermotoga maritima]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.979020 0.014344 0.000367 0.000083 0.000054 0.006160

TMHMM  Annotations      download full data without filtering help

start end
5 27