CAZyme Information: MGYG000003355_03459

Basic Information

• Species: Lachnoclostridium phytofermentans_A
• Lineage: Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Lachnoclostridium; Lachnoclostridium phytofermentans_A
• CAZyme ID: MGYG000003355_03459
• CAZy Family: PL17
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
669	MGYG000003355_149|CGC1	78478.39	4.9107

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003355	5194070	MAG	China	Asia

• Gene Location: Start: 11927; End: 13936 Strand: +

Full Sequence      

MVQFTFDEVARFRNQAENNTEIILELEKKAEDILKHGARIQEKGFATWTLYYYCPIHSVE
LSYKYDDEHHHICPVCQTVYTGEPYDGAWWRFTNGINSESCFYLALLWLLTGKEQYRELS
KEILMKYASYYPDYEVHGDIPYNNPGKANAQTLCEAIWIKGLAKGYDIIKDSLEADEISF
IEKNLFSECANFLMKYRMNQIHNHEVIVNSAIGIIGILLNDEDIIDFAVHSKYGIIYQLE
HAVLKDSFWFEGTFHYHYFALEAFFDYEKFARLTPYSQLSRQEYRDMLKMPLKLLQSDYK
APKVGDGVGDKLFRMFPDFYEFAYRIYGEWEYAWILNKVYEKYERNNLEAFLYGVDQIPD
TKEYRFDNYHDNDASGFTLFRGTNQKYLLFRHGCYGGEHDHYDKLGIHFMAFDEYLLPDV
GTTGYGAILHYDYFKNTATHNTVSINEENQPPTNSRTVRYEEMDGHILVEAEAKWDGSFP
GIDSLTRVEWDDISYSKVVMRRVILWCDQYFVEAFLVHNIGGKQVDWTVHSRGMCELANE
GFEQLSSISDKKPLKYLYDIKSYEPDGIVKTTWQYELCKLNLFSYCSTDSKVYYAKGPDN
PSIKELSYFINRVKDVDNALYVNVFEAFHSDNPFIKDVKIEVDDHNKIKVIIFSETGTIN
HEFSIGIDL

Enzyme Prediction     

No EC number prediction in MGYG000003355_03459.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL17	375	508	6e-48	0.9925925925925926

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam07940	Hepar_II_III	4.99e-10	370	505	7	137	Heparinase II/III-like protein. This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II and heparinase III. The former is known to degrade heparin and heparin sulphate, whereas the latter predominantly degrades heparin sulphate. Both are secreted into the periplasmic space upon induction with heparin.
pfam05426	Alginate_lyase	1.73e-05	104	264	64	232	Alginate lyase. This family contains several bacterial alginate lyase proteins. Alginate is a family of 1-4-linked copolymers of beta -D-mannuronic acid (M) and alpha -L-guluronic acid (G). It is produced by brown algae and by some bacteria belonging to the genera Azotobacter and Pseudomonas. Alginate lyases catalyze the depolymerization of alginates by beta -elimination, generating a molecule containing 4-deoxy-L-erythro-hex-4-enepyranosyluronate at the nonreducing end. This family adopts an all alpha fold.
smart00510	TFS2M	0.008	154	197	7	51	Domain in the central regions of transcription elongation factor S-II (and elsewhere).

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ANY69345.1	3.24e-311	1	667	1	669
BAR73165.1	3.29e-179	1	650	1	659
SET91754.1	1.01e-171	1	643	1	642
QRV20012.1	1.89e-171	1	612	1	613
ADL05862.1	1.89e-171	1	612	1	613

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
7BJT_A	9.22e-15	106	658	99	712	ChainA, Alginate lyase, family PL17 [Zobellia galactanivorans],7BJT_B Chain B, Alginate lyase, family PL17 [Zobellia galactanivorans]
7BM6_A	2.79e-14	106	658	99	712	ChainA, Alginate lyase, family PL17 [Zobellia galactanivorans],7BM6_B Chain B, Alginate lyase, family PL17 [Zobellia galactanivorans]

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000064	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003355_03459.