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CAZyme Information: MGYG000003337_01148

You are here: Home > Sequence: MGYG000003337_01148

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Ruminococcus_C sp900765125
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus_C; Ruminococcus_C sp900765125
CAZyme ID MGYG000003337_01148
CAZy Family CBM22
CAZyme Description Endo-1,4-beta-xylanase Y
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
648 MGYG000003337_208|CGC1 71484.32 4.1378
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003337 2462692 MAG China Asia
Gene Location Start: 6219;  End: 8165  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 3.2.1.8

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH10 191 526 3.6e-97 0.9933993399339934
CBM22 39 164 7.3e-25 0.9694656488549618

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam00331 Glyco_hydro_10 3.93e-111 192 526 1 310
Glycosyl hydrolase family 10.
smart00633 Glyco_10 5.19e-98 233 524 1 263
Glycosyl hydrolase family 10.
COG3693 XynA 3.93e-68 197 526 31 339
Endo-1,4-beta-xylanase, GH35 family [Carbohydrate transport and metabolism].
pfam02018 CBM_4_9 2.72e-13 40 166 5 132
Carbohydrate binding domain. This family includes diverse carbohydrate binding domains.
cd14256 Dockerin_I 6.23e-11 581 633 1 53
Type I dockerin repeat domain. Bacterial cohesin domains bind to a complementary protein domain named dockerin, and this interaction is required for the formation of the cellulosome, a cellulose-degrading complex. The cellulosome consists of scaffoldin, a noncatalytic scaffolding polypeptide, that comprises repeating cohesion modules and a single carbohydrate-binding module (CBM). Specific calcium-dependent interactions between cohesins and dockerins appear to be essential for cellulosome assembly. This subfamily represents type I dockerins, which are responsible for anchoring a variety of enzymatic domains to the complex.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL16579.1 2.98e-218 4 632 7 621
CAB65753.1 1.95e-188 32 528 27 532
CAL91979.1 2.74e-181 28 528 18 525
ADU21885.1 9.08e-179 5 533 7 545
CAL91978.1 2.02e-165 70 529 2 466

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
2W5F_A 3.52e-102 57 524 41 524
ChainA, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus],2W5F_B Chain B, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus]
2WYS_A 4.86e-98 57 524 41 524
ChainA, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus],2WYS_B Chain B, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus],2WZE_A Chain A, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus],2WZE_B Chain B, ENDO-1,4-BETA-XYLANASE Y [Acetivibrio thermocellus]
6FHE_A 2.42e-67 184 525 5 339
Highlyactive enzymes by automated modular backbone assembly and sequence design [synthetic construct]
6D5C_A 9.07e-67 189 526 20 349
Structureof Caldicellulosiruptor danielii GH10 module of glycoside hydrolase WP_045175321 [Caldicellulosiruptor danielii],6D5C_B Structure of Caldicellulosiruptor danielii GH10 module of glycoside hydrolase WP_045175321 [Caldicellulosiruptor danielii],6D5C_C Structure of Caldicellulosiruptor danielii GH10 module of glycoside hydrolase WP_045175321 [Caldicellulosiruptor danielii]
5OFJ_A 1.29e-66 188 526 7 337
Crystalstructure of N-terminal domain of bifunctional CbXyn10C [Caldicellulosiruptor bescii DSM 6725]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P29126 1.69e-103 191 521 629 946
Bifunctional endo-1,4-beta-xylanase XylA OS=Ruminococcus flavefaciens OX=1265 GN=xynA PE=3 SV=1
P51584 1.01e-97 3 524 2 535
Endo-1,4-beta-xylanase Y OS=Acetivibrio thermocellus OX=1515 GN=xynY PE=1 SV=1
Q60037 5.14e-83 24 525 189 690
Endo-1,4-beta-xylanase A OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=xynA PE=1 SV=1
Q60042 6.06e-81 24 525 184 686
Endo-1,4-beta-xylanase A OS=Thermotoga neapolitana OX=2337 GN=xynA PE=1 SV=1
P36917 3.33e-72 38 526 197 674
Endo-1,4-beta-xylanase A OS=Thermoanaerobacterium saccharolyticum OX=28896 GN=xynA PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000312 0.998926 0.000207 0.000227 0.000169 0.000141

TMHMM  Annotations      download full data without filtering help

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