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CAZyme Information: MGYG000003335_00793

You are here: Home > Sequence: MGYG000003335_00793

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species GCA-900066135 sp900543575
Lineage Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; GCA-900066135; GCA-900066135 sp900543575
CAZyme ID MGYG000003335_00793
CAZy Family PL27
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
336 MGYG000003335_87|CGC1 38484.37 4.5049
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003335 3295822 MAG China Asia
Gene Location Start: 8388;  End: 9398  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.-

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL27 110 332 9.7e-96 0.36065573770491804

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
cd13580 PBP2_AlgQ_like_1 0.002 79 131 1 48
Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold. This subgroup includes uncharacterized periplasmic-binding proteins that are closely related to high molecular weight (HMW) alginate bining proteins (AlgQ1 and AlgQ2) found in gram-negative soil bacteria. The HMW alginate uptake system is composed of a novel pit formed on the cell surface and a pit-dependent ATP-binding cassette (ABC) transporter in the inner membrane. The transportation of HMW alginate from the pit to the ABC transporter is mediated by periplasmic HMW alginate-binding proteins (AlgQ1 and AlgQ2). Alginate is an anionic polysaccharide that is made up of alpha-L-mannuronate and its 5'-epimer, alpha-L-guluronate. Alginate is present in the cell walls of brown seaweeds, where it forms a viscous gum by binding water. Alginate is also produced by two bacteria genera Pseudomonas and Azotobacter. AlgQ1 and AlgQ2 belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. However, unlike other bacterial periplasmic-binding proteins that deliver small solutes to ABC transporters, AlgQ1/2 can bind a macromolecule and may have specificity for either sugar or a certain type of polysaccharide.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QDP95951.1 5.75e-81 129 336 421 628
QTE69095.1 4.34e-77 122 332 377 592
ADL35858.1 5.46e-77 115 332 364 582
ALJ58888.1 6.65e-75 57 331 382 684
EEF91483.1 1.82e-74 57 331 382 684

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5NO8_A 6.67e-76 57 331 382 684
PolysaccharideLyase BACCELL_00875 [Bacteroides cellulosilyticus DSM 14838],5NO8_B Polysaccharide Lyase BACCELL_00875 [Bacteroides cellulosilyticus DSM 14838]
5NOK_A 1.31e-75 57 331 382 684
PolysaccharideLyase BACCELL_00875 [Bacteroides cellulosilyticus DSM 14838],5NOK_B Polysaccharide Lyase BACCELL_00875 [Bacteroides cellulosilyticus DSM 14838]

Swiss-Prot Hits      help

has no Swissprot hit.

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000043 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003335_00793.