CAZyme Information: MGYG000003237_02848

Basic Information

• Species: Victivallis sp002998355
• Lineage: Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis sp002998355
• CAZyme ID: MGYG000003237_02848
• CAZy Family: GH0
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
986		110977.76	6.6877

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000003237	4618450	MAG	United States	North America

• Gene Location: Start: 27273; End: 30233 Strand: -

Full Sequence      

MKLVTLFNVNLPEDILMNLKFLKLKGLLFCCLTAATATAQPPARVMLDDFTTITTWQNMG
GTENPEENIYWSRCGSFPDASRPDGYCAKLTFDAAGREAEFGMGNNRVFLQKLDENAEGI
RLQVNPCGFNTRFTADLKLSDGELIRTAYVPASGDGWREIFIPFPKEKIAGRHPFSVYRL
VVWFSGPARGEIFFDDVEVDFKKLPEDLAPLTAEPVYRKLGWRPGEQVTPEYLFRNRLST
PFSGEITVKGAGKEFTRKIELPPYGLCYQQFDFGSFDTQEPHPVAVAFGGEPLHLGWISV
FEPNSGPVNKRPMWFSVEDQELNNCYEEGVLHASWLPLLGVDMIRAGLMGNAQMAKGKLR
AEALRKLWTPPIEAGVKLLIDYAGYMPPWVIRPNPTSPLDCRWEEFDALMTEFAKFFGAM
PEARYFEFINEPNLNHSRTMTDDYLTALSRLYPIFKKHAPHVKITTGGFCPAIPGSQPQF
IERLLARPEIFDVIAYHEHGNYPHYRFTFDIVKKIAGPGHKPIINTEAATRSFMAAPREF
YAQADQLVRKITYSKAVGMEYYNWFMMQDYWDKGIGADDTFSLVTVYNQPKPSFLAYAEL
IRQLSNRDFSGMAELDPLLEAFRFTGETDEVTVVWEKRRADGLKFVLRSDVPVLRTDIYG
NTRTLKPQSGLVTVESASLPFYLKAPKGKLQAQPRLLSFRDGLAAVPGERVKTVVTLVNP
LPQALRYRLKLGGRSFSGELKRGESREIPVNVTIPAEQLHGESVIPAELILSDRNGKVFE
DSLPIPYVCCVEIPEKGAPEKTVVLDSPAALRELVFVPTIPRWSGKEDLSATLSFSWSGE
GLHVRCRVTDQEHNGDHTGPHIWKNDSIQFGLDPMNGRNWSEYTFSLTGDGAAAWNHNPP
EGFKSGKFDGACSVTRRGNLTEYSFTIPPERLGFELKDGTQFRIALLINDSDGGIRSRTM
LFFDGLDGHKDTGKFGLVQLRSGRRK

Enzyme Prediction     

No EC number prediction in MGYG000003237_02848.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd09621	CBM9_like_5	2.75e-39	803	980	3	188	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other functional domains such as glycosyl hydrolases. The CBM9 module in these architectures may be involved in binding to carbohydrates.
cd09619	CBM9_like_4	3.47e-10	823	967	30	177	DOMON-like type 9 carbohydrate binding module. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. CBM9 domains found in this uncharacterized heterogeneous subfamily are often located at the C-terminus of longer proteins and may co-occur with various other domains.
cd00241	DOMON_like	1.28e-08	814	962	3	158	Domon-like ligand-binding domains. DOMON-like domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes. DOMON domains were initially thought to confer protein-protein interactions. They were subsequently found as a heme-binding motif in cellobiose dehydrogenase, an extracellular fungal oxidoreductase that degrades both lignin and cellulose, and in ethylbenzene dehydrogenase, an enzyme that aids in the anaerobic degradation of hydrocarbons. The domain interacts with sugars in the type 9 carbohydrate binding modules (CBM9), which are present in a variety of glycosyl hydrolases, and it can also be found at the N-terminus of sensor histidine kinases.
pfam06452	CBM9_1	7.33e-07	817	980	15	181	Carbohydrate family 9 binding domain-like. CBM9_1 is a C-terminal domain on bacterial xylanase proteins, and it is tandemly repeated in a number of family-members. The CBM9 module binds to amorphous and crystalline cellulose and a range of soluble di- and monosaccharides as well as to cello- and xylo- oligomers of different degrees of polymerization. Comparison of the glucose and cellobiose complexes during crystallisation reveals surprising differences in binding of these two substrates by CBM9-2. Cellobiose was found to bind in a distinct orientation from glucose, while still maintaining optimal stacking and electrostatic interactions with the reducing end sugar.
cd00005	CBM9_like_1	1.04e-06	824	980	32	184	DOMON-like type 9 carbohydrate binding module of xylanases. Family 9 carbohydrate-binding modules (CBM9) play a role in the microbial degradation of cellulose and hemicellulose (materials found in plants). The domain has previously been called cellulose-binding domain. The polysaccharide binding sites of CBMs with available 3D structure have been found to be either flat surfaces with interactions formed by predominantly aromatic residues (tryptophan and tyrosine), or extended shallow grooves. The CBM9 domain frequently occurs in tandem repeats; members found in this subfamily typically co-occur with glycosyl hydrolase family 10 domains and are annotated as endo-1,4-beta-xylanases. CBM9 from Thermotoga maritima xylanase 10A is reported to have specificity for polysaccharide reducing ends.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AVM46712.1	0.0	1	986	32	1017
AVM46714.1	0.0	39	982	21	970
AVM46501.1	6.40e-161	44	981	195	1154
AHF92778.1	1.84e-140	32	980	198	1177
AVM46271.1	9.59e-109	44	976	22	961

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.105867	0.890739	0.002553	0.000354	0.000235	0.000245

TMHMM  Annotations     

There is no transmembrane helices in MGYG000003237_02848.