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CAZyme Information: MGYG000003139_01616

You are here: Home > Sequence: MGYG000003139_01616

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Clostridium_G cochlearium
Lineage Bacteria; Firmicutes_A; Clostridia; Clostridiales; Clostridiaceae; Clostridium_G; Clostridium_G cochlearium
CAZyme ID MGYG000003139_01616
CAZy Family GH39
CAZyme Description HTH-type transcriptional activator RhaS
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
692 MGYG000003139_18|CGC1 82179.39 4.8073
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000003139 2361241 MAG United States North America
Gene Location Start: 42715;  End: 44793  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000003139_01616.

CAZyme Signature Domains help

Family Start End Evalue family coverage
GH39 480 640 1.4e-17 0.35498839907192575

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG2207 AraC 2.03e-22 155 276 2 123
AraC-type DNA-binding domain and AraC-containing proteins [Transcription].
smart00342 HTH_ARAC 5.69e-20 189 272 1 84
helix_turn_helix, arabinose operon control protein.
pfam12833 HTH_18 1.57e-17 195 274 1 81
Helix-turn-helix domain.
COG4753 YesN 4.74e-13 1 276 190 475
Two-component response regulator, YesN/AraC family, consists of REC and AraC-type DNA-binding domains [Signal transduction mechanisms, Transcription].
COG3664 XynB 9.73e-11 528 657 273 396
Beta-xylosidase [Carbohydrate transport and metabolism].

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QLY81077.1 0.0 1 692 1 693
QXE20743.1 1.52e-312 1 687 1 688
AZV56511.1 2.89e-310 1 687 1 688
QAT40622.1 1.66e-309 1 686 1 687
ATD56640.1 4.36e-305 1 685 1 686

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6SWI_A 1.40e-10 177 281 9 114
TheC-terminal domain of AraT, a response regulator from Geobacillus stearothermophilus [Geobacillus stearothermophilus]
4M29_A 4.66e-07 523 649 334 460
Structureof a GH39 Beta-xylosidase from Caulobacter crescentus [Caulobacter vibrioides CB15]
4EKJ_A 8.11e-07 523 649 334 460
ChainA, Beta-xylosidase [Caulobacter vibrioides]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q8NYT6 4.02e-11 30 657 21 712
Uncharacterized HTH-type transcriptional regulator MW0077 OS=Staphylococcus aureus (strain MW2) OX=196620 GN=MW0077 PE=4 SV=1
Q6GD21 4.02e-11 30 657 21 712
Uncharacterized HTH-type transcriptional regulator SAS0078 OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=SAS0078 PE=4 SV=1
Q6GKK1 9.19e-11 30 686 21 741
Uncharacterized HTH-type transcriptional regulator SAR0107 OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=SAR0107 PE=4 SV=1
Q7A882 2.76e-10 30 657 21 712
Uncharacterized HTH-type transcriptional regulator SA0097 OS=Staphylococcus aureus (strain N315) OX=158879 GN=SA0097 PE=4 SV=1
Q99XB1 2.76e-10 30 657 21 712
Uncharacterized HTH-type transcriptional regulator SAV0101 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=SAV0101 PE=4 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000041 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000003139_01616.