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CAZyme Information: MGYG000002960_01960
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Prevotella sp900555035 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Prevotella; Prevotella sp900555035 | |||||||||||
| CAZyme ID | MGYG000002960_01960 | |||||||||||
| CAZy Family | GH28 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 9560; End: 11539 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| GH28 | 83 | 424 | 7.2e-51 | 0.9107692307692308 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam00295 | Glyco_hydro_28 | 4.68e-24 | 131 | 424 | 38 | 307 | Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes are important in cell wall metabolism. |
| COG5434 | Pgu1 | 2.74e-23 | 44 | 353 | 73 | 405 | Polygalacturonase [Carbohydrate transport and metabolism]. |
| PLN02218 | PLN02218 | 1.25e-21 | 48 | 424 | 61 | 412 | polygalacturonase ADPG |
| PLN03003 | PLN03003 | 3.84e-20 | 46 | 371 | 15 | 315 | Probable polygalacturonase At3g15720 |
| PLN02188 | PLN02188 | 1.73e-18 | 51 | 425 | 33 | 379 | polygalacturonase/glycoside hydrolase family protein |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QNT65232.1 | 0.0 | 2 | 659 | 6 | 668 |
| QEC72689.1 | 1.21e-64 | 45 | 467 | 51 | 449 |
| BAV07348.1 | 5.38e-62 | 36 | 457 | 36 | 430 |
| AYD47266.1 | 2.18e-46 | 44 | 443 | 28 | 414 |
| QEC57624.1 | 2.59e-46 | 44 | 443 | 30 | 416 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 1BHE_A | 6.96e-22 | 70 | 432 | 26 | 373 | ChainA, POLYGALACTURONASE [Pectobacterium carotovorum] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P26509 | 5.18e-21 | 70 | 432 | 52 | 399 | Endo-polygalacturonase OS=Pectobacterium parmentieri OX=1905730 GN=pehA PE=1 SV=1 |
| P18192 | 3.01e-20 | 70 | 415 | 52 | 400 | Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=peh PE=3 SV=1 |
| Q9LW07 | 6.59e-19 | 46 | 371 | 15 | 315 | Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana OX=3702 GN=At3g15720 PE=3 SV=1 |
| P35336 | 3.98e-18 | 49 | 435 | 84 | 443 | Polygalacturonase OS=Actinidia deliciosa OX=3627 PE=2 SV=1 |
| Q40312 | 5.00e-13 | 82 | 356 | 53 | 312 | Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000249 | 0.999066 | 0.000202 | 0.000160 | 0.000155 | 0.000136 |