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CAZyme Information: MGYG000002779_00564

You are here: Home > Sequence: MGYG000002779_00564

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Holdemania sp900120005
Lineage Bacteria; Firmicutes; Bacilli; Erysipelotrichales; Erysipelotrichaceae; Holdemania; Holdemania sp900120005
CAZyme ID MGYG000002779_00564
CAZy Family PL12
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
654 MGYG000002779_4|CGC1 75435.07 5.4112
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002779 3078380 MAG United States North America
Gene Location Start: 43274;  End: 45238  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002779_00564.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL12 357 491 3.8e-35 0.9703703703703703

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam16889 Hepar_II_III_N 1.16e-23 68 313 84 343
Heparinase II/III N-terminus. This is the N-terminal domain of heparinase II/III proteins. It is a toroid-like domain.
pfam07940 Hepar_II_III 3.23e-21 378 551 36 211
Heparinase II/III-like protein. This family features sequences that are similar to a region of the Flavobacterium heparinum proteins heparinase II and heparinase III. The former is known to degrade heparin and heparin sulphate, whereas the latter predominantly degrades heparin sulphate. Both are secreted into the periplasmic space upon induction with heparin.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
QNM12883.1 1.56e-171 1 654 1 652
QIK69285.1 2.47e-129 32 644 26 618
VEH83539.1 1.24e-126 31 648 29 634
AYV34278.1 6.88e-126 31 648 29 634
QDS39484.1 3.82e-125 31 648 29 634

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
4MMH_A 7.96e-12 67 431 98 453
Crystalstructure of heparan sulfate lyase HepC from Pedobacter heparinus [Pedobacter heparinus]
4MMI_A 7.96e-12 67 431 98 453
Crystalstructure of heparan sulfate lyase HepC mutant from Pedobacter heparinus [Pedobacter heparinus]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q59289 4.44e-11 67 431 122 477
Heparin-sulfate lyase OS=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / CIP 104194 / JCM 7457 / NBRC 12017 / NCIMB 9290 / NRRL B-14731 / HIM 762-3) OX=485917 GN=hepC PE=1 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000045 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002779_00564.