dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000002620_01970

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Basic Information help

Species

Desulfovibrio desulfuricans

Lineage

Bacteria; Desulfobacterota; Desulfovibrionia; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio; Desulfovibrio desulfuricans

CAZyme ID

MGYG000002620_01970

CAZy Family

GT4

CAZyme Description

Vitamin B12 import ATP-binding protein BtuD

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
661	MGYG000002620_9\|CGC1	72342.34	7.4593

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002620	3478150	MAG	China	Asia

Gene Location

Start: 37402; End: 39387 Strand: -

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000002620_01970.

CAZyme Signature Domains help

Family	Start	End	Evalue	family coverage
GT4	471	630	1.1e-31	0.95625

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd03255	ABC_MJ0796_LolCDE_FtsE	1.04e-95	5	217	1	216	ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
COG1136	LolD	1.96e-92	4	217	1	218	ABC-type lipoprotein export system, ATPase component [Cell wall/membrane/envelope biogenesis].
NF038007	ABC_ATP_DarD	1.74e-66	12	219	9	218	darobactin export ABC transporter ATP-binding protein.
COG4181	YbbA	1.95e-61	2	217	4	222	Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport and catabolism].
TIGR03608	L_ocin_972_ABC	5.32e-61	20	214	13	206	putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]

CAZyme Hits help

Hit ID	Query Start	Query End	Hit Start	Hit End
QTO41437.1	1	661	1	661
QCC85257.1	1	661	1	660
ATD81516.1	1	660	1	653
SPD34221.1	1	660	1	653
VZH35395.1	1	660	1	655

PDB Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
5XU1_A	5.01e-48	1	219	13	233	Structureof a non-canonical ABC transporter from Streptococcus pneumoniae R6 [Streptococcus pneumoniae R6],5XU1_B Structure of a non-canonical ABC transporter from Streptococcus pneumoniae R6 [Streptococcus pneumoniae R6]
1L2T_A	7.18e-48	11	217	11	221	ChainA, Hypothetical ABC transporter ATP-binding protein MJ0796 [Methanocaldococcus jannaschii],1L2T_B Chain B, Hypothetical ABC transporter ATP-binding protein MJ0796 [Methanocaldococcus jannaschii]
3TIF_A	9.71e-47	11	217	11	221	Dimericstructure of a post-hydrolysis state of the ATP-binding cassette MJ0796 bound to ADP and Pi [Methanocaldococcus jannaschii DSM 2661],3TIF_B Dimeric structure of a post-hydrolysis state of the ATP-binding cassette MJ0796 bound to ADP and Pi [Methanocaldococcus jannaschii DSM 2661]
5LJ9_A	4.38e-46	1	217	1	219	Structureof the E. coli MacB ABC domain (C2221) [Escherichia coli K-12],5LJ9_B Structure of the E. coli MacB ABC domain (C2221) [Escherichia coli K-12],5LJ9_C Structure of the E. coli MacB ABC domain (C2221) [Escherichia coli K-12],5LJA_A Structure of the E. coli MacB ABC domain (P6122) [Escherichia coli K-12]
1F3O_A	4.76e-45	5	217	2	221	Crystalstructure of MJ0796 ATP-binding cassette [Methanocaldococcus jannaschii]

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q9WYI7	7.71e-53	1	217	1	219	Uncharacterized ABC transporter ATP-binding protein TM_0352 OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=TM_0352 PE=3 SV=1
O31711	3.53e-50	20	217	20	216	Uncharacterized ABC transporter ATP-binding protein YknY OS=Bacillus subtilis (strain 168) OX=224308 GN=yknY PE=1 SV=1
O34979	4.76e-50	11	224	11	223	Uncharacterized ABC transporter ATP-binding protein YvrO OS=Bacillus subtilis (strain 168) OX=224308 GN=yvrO PE=3 SV=2
Q9A6Z7	3.30e-49	3	223	4	227	Lipoprotein-releasing system ATP-binding protein LolD 2 OS=Caulobacter vibrioides (strain ATCC 19089 / CB15) OX=190650 GN=lolD2 PE=3 SV=1
Q58903	1.48e-47	5	217	2	216	Uncharacterized ABC transporter ATP-binding protein MJ1508 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) OX=243232 GN=MJ1508 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000051	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM Annotations help

There is no transmembrane helices in MGYG000002620_01970.