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CAZyme Information: MGYG000002596_01163
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Mediterraneibacter sp900555215 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter; Mediterraneibacter sp900555215 | |||||||||||
| CAZyme ID | MGYG000002596_01163 | |||||||||||
| CAZy Family | GH2 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 22674; End: 26435 Strand: - | |||||||||||
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam18565 | Glyco_hydro2_C5 | 8.83e-33 | 164 | 275 | 1 | 103 | Glycoside hydrolase family 2 C-terminal domain 5. Domain 5 is found in dimeric beta-D-galactosidase from Paracoccus sp. 32d, which contributes to stabilization of the functional dimer. It is suggested that the location of this domain 5, may be one of the factors responsible for the creation of a functional dimer and cold-adaptation of this enzyme. |
| pfam00754 | F5_F8_type_C | 1.08e-08 | 730 | 847 | 8 | 118 | F5/8 type C domain. This domain is also known as the discoidin (DS) domain family. |
| cd00222 | CollagenBindB | 1.96e-08 | 871 | 938 | 3 | 70 | Repeat unit of collagen-binding protein domain B. The collagen-binding protein mediates bacterial adherence to collagen; the primary sequence has a non-repetitive, collagen-binding A region, followed by instances of this B region repetitive unit. The B region has one to four 23 kDa repeat units (B1-B4), which have been suggested to serve as 'stalks' that project the A region from the bacterial surface and thus facilitate bacterial adherence to collagen. Each B repeat unit has two highly similar domains (D1 and D2) placed side-by-side; both D1 and D2 are included in this model. They exhibit a unique inverse IgG-like domain fold. |
| pfam05738 | Cna_B | 2.97e-08 | 871 | 938 | 1 | 68 | Cna protein B-type domain. This domain is found in Staphylococcus aureus collagen-binding surface protein. The structure of the repetitive B-region has been solved and forms a beta sandwich structure. |
| pfam16355 | DUF4982 | 1.01e-07 | 58 | 145 | 3 | 59 | Domain of unknown function (DUF4982). This family is found in the C-terminal of uncharacterized proteins and beta-galactosidases around 680 residues in length from various Bacteroides species. The function of this protein is unknown. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AQW26848.1 | 1.59e-113 | 2 | 699 | 630 | 1306 |
| AMN35793.1 | 8.00e-113 | 2 | 668 | 630 | 1289 |
| SQG39187.1 | 1.98e-112 | 2 | 664 | 630 | 1285 |
| ATD48593.1 | 1.98e-112 | 2 | 689 | 630 | 1296 |
| AMN32811.1 | 3.71e-112 | 2 | 689 | 630 | 1296 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 7NIT_A | 8.98e-84 | 3 | 686 | 612 | 1295 | ChainA, Beta-galactosidase [Bifidobacterium bifidum],7NIT_B Chain B, Beta-galactosidase [Bifidobacterium bifidum],7NIT_C Chain C, Beta-galactosidase [Bifidobacterium bifidum],7NIT_D Chain D, Beta-galactosidase [Bifidobacterium bifidum],7NIT_E Chain E, Beta-galactosidase [Bifidobacterium bifidum],7NIT_F Chain F, Beta-galactosidase [Bifidobacterium bifidum] |
| 5DMY_A | 9.85e-49 | 3 | 278 | 618 | 882 | Beta-galactosidase- construct 33-930 [Bifidobacterium bifidum],5DMY_B Beta-galactosidase - construct 33-930 [Bifidobacterium bifidum],5DMY_C Beta-galactosidase - construct 33-930 [Bifidobacterium bifidum] |
| 6QUB_B | 9.24e-48 | 3 | 278 | 589 | 853 | Truncatedbeta-galactosidase III from Bifidobacterium bifidum in complex with galactose [Bifidobacterium bifidum] |
| 6QUB_A | 1.12e-47 | 3 | 278 | 612 | 876 | Truncatedbeta-galactosidase III from Bifidobacterium bifidum in complex with galactose [Bifidobacterium bifidum],6QUC_A Truncated beta-galactosidase III from Bifidobacterium bifidum [Bifidobacterium bifidum],6QUC_B Truncated beta-galactosidase III from Bifidobacterium bifidum [Bifidobacterium bifidum],6QUD_A 2-deoxy-galactose reaction intermediate of a Truncated beta-galactosidase III from Bifidobacterium bifidum [Bifidobacterium bifidum] |
| 4CUC_A | 3.42e-39 | 4 | 284 | 588 | 849 | Unravellingthe multiple functions of the architecturally intricate Streptococcus pneumoniae beta-galactosidase, BgaA. [Streptococcus pneumoniae TIGR4] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| A7LXS9 | 1.85e-22 | 10 | 269 | 631 | 839 | Beta-galactosidase BoGH2A OS=Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / BCRC 10623 / CCUG 4943 / NCTC 11153) OX=411476 GN=BACOVA_02645 PE=1 SV=1 |
| T2KM09 | 3.24e-14 | 14 | 282 | 602 | 813 | Putative beta-glucuronidase OS=Formosa agariphila (strain DSM 15362 / KCTC 12365 / LMG 23005 / KMM 3901 / M-2Alg 35-1) OX=1347342 GN=BN863_22050 PE=2 SV=2 |
| A0A401ETL2 | 1.45e-13 | 422 | 682 | 1093 | 1369 | Exo-beta-1,6-galactobiohydrolase OS=Bifidobacterium longum subsp. longum (strain ATCC 15707 / DSM 20219 / JCM 1217 / NCTC 11818 / E194b) OX=565042 GN=bl1,6Gal PE=1 SV=1 |
| P29767 | 4.36e-08 | 696 | 906 | 39 | 229 | Sialidase OS=Clostridium septicum OX=1504 PE=3 SV=1 |
| Q53654 | 2.32e-07 | 759 | 1036 | 483 | 787 | Collagen adhesin OS=Staphylococcus aureus OX=1280 GN=cna PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.999674 | 0.000348 | 0.000004 | 0.000001 | 0.000000 | 0.000001 |
