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CAZyme Information: MGYG000002573_01332

You are here: Home > Sequence: MGYG000002573_01332

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Ruminococcus_C sp900545285
Lineage Bacteria; Firmicutes_A; Clostridia; Oscillospirales; Ruminococcaceae; Ruminococcus_C; Ruminococcus_C sp900545285
CAZyme ID MGYG000002573_01332
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
973 105651.38 4.7229
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002573 2234911 MAG China Asia
Gene Location Start: 16646;  End: 19567  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002573_01332.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 208 437 2.2e-34 0.9603960396039604
CBM13 563 709 9.6e-20 0.7021276595744681
CBM13 717 875 6.4e-19 0.7819148936170213

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 8.17e-39 157 510 14 341
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 1.43e-20 239 438 17 190
Amb_all domain.
pfam14200 RicinB_lectin_2 1.09e-16 559 642 10 89
Ricin-type beta-trefoil lectin domain-like.
pfam14200 RicinB_lectin_2 4.03e-16 648 747 1 89
Ricin-type beta-trefoil lectin domain-like.
pfam14200 RicinB_lectin_2 3.19e-13 602 691 5 89
Ricin-type beta-trefoil lectin domain-like.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
CBL17651.1 7.73e-164 35 964 33 889
CDM70399.1 6.00e-155 6 707 2 696
AUO18238.1 2.92e-143 2 707 4 707
CBL16867.1 8.41e-128 34 970 33 915
ASR46637.1 5.57e-72 41 520 39 527

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3ZSC_A 2.06e-14 190 406 20 214
Catalyticfunction and substrate recognition of the pectate lyase from Thermotoga maritima [Thermotoga maritima]
1PCL_A 1.03e-11 187 470 14 318
ChainA, PECTATE LYASE E [Dickeya chrysanthemi]
1VBL_A 1.48e-11 291 405 192 301
Structureof the thermostable pectate lyase PL 47 [Bacillus sp. TS-47]
3VMV_A 1.96e-10 172 415 2 233
Crystalstructure of pectate lyase Bsp165PelA from Bacillus sp. N165 [Bacillus sp. N16-5],3VMW_A Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate [Bacillus sp. N16-5]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P94449 2.26e-22 172 513 34 339
Pectin lyase OS=Bacillus subtilis OX=1423 GN=pelB PE=1 SV=1
O34819 4.10e-22 172 513 34 339
Pectin lyase OS=Bacillus subtilis (strain 168) OX=224308 GN=pelB PE=3 SV=1
Q9WYR4 2.51e-15 163 406 23 241
Pectate trisaccharide-lyase OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=pelA PE=1 SV=1
B1L969 7.87e-15 163 406 21 239
Pectate trisaccharide-lyase OS=Thermotoga sp. (strain RQ2) OX=126740 GN=pelA PE=3 SV=1
Q65DC2 5.06e-11 174 406 44 250
Pectate trisaccharide-lyase OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / CCUG 7422 / NBRC 12200 / NCIMB 9375 / NCTC 10341 / NRRL NRS-1264 / Gibson 46) OX=279010 GN=BLi04129 PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as SP

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000254 0.999086 0.000177 0.000163 0.000148 0.000135

TMHMM  Annotations      download full data without filtering help

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