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CAZyme Information: MGYG000002560_02334

You are here: Home > Sequence: MGYG000002560_02334

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Phocaeicola sp902388365
Lineage Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola sp902388365
CAZyme ID MGYG000002560_02334
CAZy Family PL1
CAZyme Description hypothetical protein
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
509 MGYG000002560_12|CGC1 55525.5 5.4517
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002560 5390440 MAG China Asia
Gene Location Start: 90311;  End: 91840  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

No EC number prediction in MGYG000002560_02334.

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL1 97 286 1.3e-79 0.994535519125683

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
COG3866 PelB 8.72e-10 4 404 2 341
Pectate lyase [Carbohydrate transport and metabolism].
smart00656 Amb_all 3.14e-07 99 266 3 167
Amb_all domain.
pfam00544 Pec_lyase_C 0.005 140 264 61 190
Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ADY37155.1 6.17e-228 33 508 52 530
QNL41084.1 9.70e-221 18 509 19 525
QUT78076.1 4.22e-220 18 509 19 527
QDM11673.1 4.22e-220 18 509 19 527
QRQ55767.1 1.20e-219 18 509 19 527

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
6FI2_A 3.11e-06 53 265 47 251
VexL:A periplasmic depolymerase provides new insight into ABC transporter-dependent secretion of bacterial capsular polysaccharides [Achromobacter denitrificans]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
B0XMA2 1.85e-56 43 506 19 419
Probable pectate lyase C OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) OX=451804 GN=plyC PE=3 SV=1
Q4WL88 3.61e-56 43 506 19 419
Probable pectate lyase C OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) OX=330879 GN=plyC PE=3 SV=1
A1DPF0 3.74e-55 43 506 19 419
Probable pectate lyase C OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=plyC PE=3 SV=1
Q5B297 4.07e-53 31 502 5 411
Probable pectate lyase C OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=plyC PE=3 SV=1
Q0CLG7 2.05e-52 47 506 22 418
Probable pectate lyase C OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) OX=341663 GN=plyC PE=3 SV=1

SignalP and Lipop Annotations help

This protein is predicted as LIPO

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.000422 0.379430 0.619648 0.000181 0.000156 0.000142

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002560_02334.