dbCAN-seq: a database of CAZyme sequence and annotation

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CAZyme Information: MGYG000002548_00767

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Basic Information help

Species

Staphylococcus argenteus

Lineage

Bacteria; Firmicutes; Bacilli; Staphylococcales; Staphylococcaceae; Staphylococcus; Staphylococcus argenteus

CAZyme ID

MGYG000002548_00767

CAZy Family

CBM50

CAZyme Description

Elastin-binding protein EbpS

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
477	MGYG000002548_6\|CGC1	52707.38	7.0347

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002548	2783391	Isolate	China	Asia

Gene Location

Start: 11783; End: 13216 Strand: -

Full Sequence Download help

Enzyme Prediction help

No EC number prediction in MGYG000002548_00767.

CDD Domains download full data without filtering help

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
NF033598	elast_bind_EbpS	5.11e-52	2	477	1	466	elastin-binding protein EbpS. The elastin-binding protein EbpS is an adhesin described in Staphylococcus aureus, with orthologs found in many additional staphylococcal species. EbpS is a membrane protein that lacks an N-terminal signal peptide region, has extensive regions low-complexity sequence rich in Asn and Gln, and has a C-terminal LysM domain.
cd00118	LysM	2.33e-05	430	476	3	45	Lysin Motif is a small domain involved in binding peptidoglycan. LysM, a small globular domain with approximately 40 amino acids, is a widespread protein module involved in binding peptidoglycan in bacteria and chitin in eukaryotes. The domain was originally identified in enzymes that degrade bacterial cell walls, but proteins involved in many other biological functions also contain this domain. It has been reported that the LysM domain functions as a signal for specific plant-bacteria recognition in bacterial pathogenesis. Many of these enzymes are modular and are composed of catalytic units linked to one or several repeats of LysM domains. LysM domains are found in bacteria and eukaryotes.
pfam01476	LysM	2.91e-05	430	477	1	43	LysM domain. The LysM (lysin motif) domain is about 40 residues long. It is found in a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. The structure of this domain is known.
COG5271	MDN1	0.001	17	205	3830	4027	Midasin, AAA ATPase with vWA domain, involved in ribosome maturation [Translation, ribosomal structure and biogenesis].

CAZyme Hits help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
ATZ87275.1	2.80e-238	1	477	1	477
QFG75972.1	2.80e-238	1	477	1	477
QFG75980.1	2.80e-238	1	477	1	477
QFG75969.1	2.80e-238	1	477	1	477
BBN29650.1	2.80e-238	1	477	1	477

PDB Hits help

has no PDB hit.

Swiss-Prot Hits download full data without filtering help

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
Q53630	9.21e-139	1	477	1	486	Elastin-binding protein EbpS OS=Staphylococcus aureus OX=1280 GN=ebpS PE=1 SV=4
Q6GGT1	9.21e-139	1	477	1	486	Elastin-binding protein EbpS OS=Staphylococcus aureus (strain MRSA252) OX=282458 GN=ebpS PE=3 SV=3
Q8NWM5	1.70e-125	1	477	1	486	Elastin-binding protein EbpS OS=Staphylococcus aureus (strain MW2) OX=196620 GN=ebpS PE=3 SV=3
Q6G983	1.70e-125	1	477	1	486	Elastin-binding protein EbpS OS=Staphylococcus aureus (strain MSSA476) OX=282459 GN=ebpS PE=3 SV=3
Q7A5I6	3.40e-125	1	477	1	486	Elastin-binding protein EbpS OS=Staphylococcus aureus (strain N315) OX=158879 GN=ebpS PE=1 SV=3

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000047	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM Annotations download full data without filtering help

start	end
312	334