logo
sublogo
You are browsing environment: HUMAN GUT
help

CAZyme Information: MGYG000002538_04132

You are here: Home > Sequence: MGYG000002538_04132

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Klebsiella pneumoniae
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella; Klebsiella pneumoniae
CAZyme ID MGYG000002538_04132
CAZy Family PL22
CAZyme Description Oligogalacturonate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
391 MGYG000002538_1|CGC53 44104.36 5.9391
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002538 5484149 Isolate United States North America
Gene Location Start: 4340062;  End: 4341237  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.6

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL22 215 383 2.7e-79 0.6339622641509434
PL22 31 132 4.4e-30 0.37735849056603776

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam14583 Pectate_lyase22 0.0 1 384 1 384
Oligogalacturonate lyase. This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers.
COG0823 TolB 6.15e-30 16 363 73 403
Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport].
PRK00178 tolB 7.20e-10 245 378 206 314
Tol-Pal system protein TolB.
PRK04792 tolB 2.31e-09 245 378 225 333
Tol-Pal system protein TolB.
PRK04922 tolB 4.37e-07 245 378 211 319
Tol-Pal system beta propeller repeat protein TolB.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ASA00649.1 8.74e-309 1 391 1 391
APP45440.1 8.74e-309 1 391 1 391
VEC49996.1 8.74e-309 1 391 1 391
QBE71292.1 8.74e-309 1 391 1 391
APM16668.1 8.74e-309 1 391 1 391

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3PE7_A 5.64e-207 1 383 1 383
Oligogalacturonatelyase in complex with manganese [Yersinia enterocolitica subsp. enterocolitica 8081]
3C5M_A 6.70e-189 2 383 2 383
Crystalstructure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_B Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_C Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P21258 4.38e-206 1 383 1 383
Oligogalacturonate lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=ogl PE=2 SV=2
Q59418 2.40e-203 1 383 1 383
Oligogalacturonide lyase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=ogl PE=4 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.999733 0.000295 0.000008 0.000002 0.000001 0.000004

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002538_04132.