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CAZyme Information: MGYG000002535_00592

You are here: Home > Sequence: MGYG000002535_00592

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Citrobacter gillenii
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Citrobacter; Citrobacter gillenii
CAZyme ID MGYG000002535_00592
CAZy Family PL22
CAZyme Description Oligogalacturonate lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
391 MGYG000002535_1|CGC8 44048.24 5.3719
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002535 4885099 Isolate United States North America
Gene Location Start: 603979;  End: 605154  Strand: -

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.6

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL22 215 385 1.2e-79 0.6415094339622641
PL22 32 137 3e-30 0.3886792452830189

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam14583 Pectate_lyase22 0.0 1 385 1 385
Oligogalacturonate lyase. This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers.
COG0823 TolB 7.92e-29 27 362 82 402
Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport].
PRK04792 tolB 1.44e-08 245 378 225 333
Tol-Pal system protein TolB.
PRK01029 tolB 1.49e-08 218 386 167 316
Tol-Pal system protein TolB.
PRK00178 tolB 2.15e-07 245 378 206 314
Tol-Pal system protein TolB.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
ATF48197.1 2.51e-308 1 391 1 391
QCA17128.1 2.51e-308 1 391 1 391
QMR44879.1 2.51e-308 1 391 1 391
QUC30981.1 7.33e-292 1 391 1 391
QBY29352.1 4.24e-291 1 391 1 391

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
3PE7_A 9.78e-208 1 384 1 384
Oligogalacturonatelyase in complex with manganese [Yersinia enterocolitica subsp. enterocolitica 8081]
3C5M_A 1.06e-192 2 384 2 384
Crystalstructure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_B Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_C Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
P21258 2.66e-207 1 384 1 384
Oligogalacturonate lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=ogl PE=2 SV=2
Q59418 1.03e-204 1 384 1 384
Oligogalacturonide lyase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=ogl PE=4 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
1.000043 0.000000 0.000000 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002535_00592.