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CAZyme Information: MGYG000002531_02258
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Pseudobutyrivibrio fibrisolvens_A | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Firmicutes_A; Clostridia; Lachnospirales; Lachnospiraceae; Pseudobutyrivibrio; Pseudobutyrivibrio fibrisolvens_A | |||||||||||
| CAZyme ID | MGYG000002531_02258 | |||||||||||
| CAZy Family | CBM6 | |||||||||||
| CAZyme Description | hypothetical protein | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 2137478; End: 2138569 Strand: + | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| CBM2 | 278 | 353 | 7.6e-23 | 0.7524752475247525 |
| CBM2 | 172 | 251 | 2e-18 | 0.801980198019802 |
| CBM6 | 47 | 156 | 8.1e-17 | 0.7463768115942029 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| cd04084 | CBM6_xylanase-like | 4.66e-19 | 60 | 155 | 28 | 121 | Carbohydrate Binding Module 6 (CBM6); many are appended to glycoside hydrolase (GH) family 11 and GH43 xylanase domains. This family includes carbohydrate binding module 6 (CBM6) domains that are appended mainly to glycoside hydrolase (GH) family domains, including GH3, GH11, and GH43 domains. These CBM6s are non-catalytic carbohydrate binding domains that facilitate the strong binding of the GH catalytic modules with their dedicated, insoluble substrates. Examples of proteins having CMB6s belonging to this family are Microbispora bispora GghA, a 1,4-beta-D-glucan glucohydrolase (GH3); Clostridium thermocellum xylanase U (GH11), and Penicillium purpurogenum ABF3, a bifunctional alpha-L-arabinofuranosidase/xylobiohydrolase (GH43). GH3 comprises enzymes with activities including beta-glucosidase (hydrolyzes beta-galactosidase) and beta-xylosidase (hydrolyzes 1,4-beta-D-xylosidase). GH11 family comprises enzymes with xylanase (endo-1,4-beta-xylanase) activity which catalyze the hydrolysis of beta-1,4 bonds of xylan, the major component of hemicelluloses, to generate xylooligosaccharides and xylose. GH43 includes beta-xylosidases and beta-xylanases, using aryl-glycosides as substrates. CBM6 is an unusual CBM as it represents a chimera of two distinct binding sites with different modes of binding: binding site I within the loop regions and binding site II on the concave face of the beta-sandwich fold. |
| smart00637 | CBD_II | 5.82e-19 | 280 | 351 | 4 | 76 | CBD_II domain. |
| smart00637 | CBD_II | 1.71e-15 | 175 | 249 | 1 | 76 | CBD_II domain. |
| pfam00553 | CBM_2 | 4.62e-13 | 280 | 352 | 11 | 84 | Cellulose binding domain. Two tryptophan residues are involved in cellulose binding. Cellulose binding domain found in bacteria. |
| pfam00553 | CBM_2 | 2.87e-11 | 170 | 250 | 2 | 84 | Cellulose binding domain. Two tryptophan residues are involved in cellulose binding. Cellulose binding domain found in bacteria. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| CBK74994.1 | 3.24e-274 | 1 | 363 | 1 | 363 |
| ADL34336.1 | 1.54e-55 | 32 | 363 | 320 | 708 |
| CBK73783.1 | 3.73e-38 | 33 | 261 | 347 | 619 |
| AOZ96881.1 | 1.48e-27 | 32 | 261 | 734 | 983 |
| CBK74914.1 | 3.65e-26 | 158 | 261 | 199 | 301 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 6BT9_A | 7.57e-08 | 163 | 262 | 573 | 671 | ChitinaseChiA74 from Bacillus thuringiensis [Bacillus thuringiensis],6BT9_B Chitinase ChiA74 from Bacillus thuringiensis [Bacillus thuringiensis] |
| 5M77_A | 9.11e-07 | 61 | 141 | 419 | 506 | ChainA, Alpha-1,6-mannanase [Niallia circulans],5M77_B Chain B, Alpha-1,6-mannanase [Niallia circulans] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P20847 | 7.91e-22 | 169 | 256 | 455 | 542 | Endoglucanase 1 OS=Butyrivibrio fibrisolvens OX=831 GN=end1 PE=3 SV=1 |
| P54937 | 7.48e-18 | 163 | 261 | 419 | 517 | Endoglucanase A OS=Clostridium longisporum OX=1523 GN=celA PE=1 SV=1 |
| P64906 | 2.77e-07 | 280 | 350 | 50 | 121 | Uncharacterized protein Mb2009 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) OX=233413 GN=BQ2027_MB2009 PE=3 SV=1 |
| P9WLQ0 | 2.77e-07 | 280 | 350 | 50 | 121 | Uncharacterized protein MT2041 OS=Mycobacterium tuberculosis (strain CDC 1551 / Oshkosh) OX=83331 GN=MT2041 PE=3 SV=1 |
| P9WLQ1 | 2.77e-07 | 280 | 350 | 50 | 121 | Uncharacterized protein Rv1987 OS=Mycobacterium tuberculosis (strain ATCC 25618 / H37Rv) OX=83332 GN=Rv1987 PE=1 SV=1 |
SignalP and Lipop Annotations help
This protein is predicted as LIPO
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000288 | 0.277385 | 0.721939 | 0.000148 | 0.000134 | 0.000112 |