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CAZyme Information: MGYG000002525_04027
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Yersinia intermedia | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia intermedia | |||||||||||
| CAZyme ID | MGYG000002525_04027 | |||||||||||
| CAZy Family | PL22 | |||||||||||
| CAZyme Description | Oligogalacturonate lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 51016; End: 52182 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL22 | 215 | 383 | 5.9e-83 | 0.6339622641509434 |
| PL22 | 32 | 147 | 6.1e-31 | 0.42641509433962266 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam14583 | Pectate_lyase22 | 0.0 | 1 | 386 | 1 | 386 | Oligogalacturonate lyase. This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers. |
| COG0823 | TolB | 2.11e-74 | 1 | 387 | 58 | 425 | Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport]. |
| PRK05137 | tolB | 1.06e-08 | 197 | 378 | 162 | 317 | Tol-Pal system protein TolB. |
| PRK00178 | tolB | 2.82e-08 | 245 | 383 | 206 | 319 | Tol-Pal system protein TolB. |
| PRK04792 | tolB | 6.35e-08 | 245 | 382 | 225 | 337 | Tol-Pal system protein TolB. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| AVL34716.1 | 8.05e-308 | 1 | 388 | 1 | 388 |
| ARB84924.1 | 8.05e-308 | 1 | 388 | 1 | 388 |
| AJJ18206.1 | 8.05e-308 | 1 | 388 | 1 | 388 |
| QGR66561.1 | 1.14e-307 | 1 | 388 | 1 | 388 |
| VDZ54247.1 | 1.14e-307 | 1 | 388 | 1 | 388 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 3PE7_A | 1.19e-299 | 1 | 388 | 1 | 388 | Oligogalacturonatelyase in complex with manganese [Yersinia enterocolitica subsp. enterocolitica 8081] |
| 3C5M_A | 1.92e-206 | 2 | 385 | 2 | 385 | Crystalstructure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_B Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_C Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P21258 | 2.18e-256 | 1 | 388 | 1 | 388 | Oligogalacturonate lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=ogl PE=2 SV=2 |
| Q59418 | 4.40e-256 | 1 | 387 | 1 | 387 | Oligogalacturonide lyase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=ogl PE=4 SV=2 |
SignalP and Lipop Annotations help
This protein is predicted as OTHER
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 1.000031 | 0.000011 | 0.000000 | 0.000000 | 0.000000 | 0.000000 |