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CAZyme Information: MGYG000002525_04017

You are here: Home > Sequence: MGYG000002525_04017

Basic Information | Genomic context | Full Sequence | Enzyme annotations |  CAZy signature domains |  CDD domains | CAZyme hits | PDB hits | Swiss-Prot hits | SignalP and Lipop annotations | TMHMM annotations

Basic Information help

Species Yersinia intermedia
Lineage Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia intermedia
CAZyme ID MGYG000002525_04017
CAZy Family PL2
CAZyme Description Pectate disaccharide-lyase
CAZyme Property
Protein Length CGC Molecular Weight Isoelectric Point
565 MGYG000002525_18|CGC2 64876.43 6.3974
Genome Property
Genome Assembly ID Genome Size Genome Type Country Continent
MGYG000002525 5023222 Isolate Finland Europe
Gene Location Start: 39300;  End: 40997  Strand: +

Full Sequence      Download help

Enzyme Prediction      help

EC 4.2.2.9

CAZyme Signature Domains help

Family Start End Evalue family coverage
PL2 27 559 2.9e-276 0.99812734082397

CDD Domains      download full data without filtering help

Cdd ID Domain E-Value qStart qEnd sStart sEnd Domain Description
pfam06917 Pectate_lyase_2 8.27e-118 28 550 13 533
Periplasmic pectate lyase. This family consists of several Enterobacterial periplasmic pectate lyase proteins (EC:4.2.2.2). A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls.

CAZyme Hits      help

Hit ID E-Value Query Start Query End Hit Start Hit End
VDZ54274.1 0.0 1 565 1 565
AJJ20582.1 0.0 11 565 1 555
QGR68649.1 0.0 11 565 1 555
QGR73111.1 0.0 11 565 1 555
ARB86721.1 0.0 11 565 1 555

PDB Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
5A29_A 3.81e-153 21 559 29 566
Family2 Pectate Lyase from Vibrio vulnificus [Vibrio vulnificus YJ016]
6OJK_A 4.73e-119 28 546 29 544
Structureof YePL2A K291W in Complex with Tetragalacturonic Acid [Yersinia enterocolitica]
2V8J_A 3.89e-117 28 546 2 517
Structureof a Family 2 Pectate Lyase in Complex with a Transition Metal [Yersinia enterocolitica]
2V8I_A 4.94e-117 28 546 3 518
Structureof a Family 2 Pectate Lyase in a Native Form [Yersinia enterocolitica],2V8K_A Structure of a Family 2 Pectate Lyase in Complex with Trigalacturonic Acid [Yersinia enterocolitica]
6OJL_A 1.64e-116 28 546 29 544
Structureof YePL2A R194K in Complex with Pentagalacturonic Acid [Yersinia enterocolitica]

Swiss-Prot Hits      download full data without filtering help

Hit ID E-Value Query Start Query End Hit Start Hit End Description
Q05526 4.07e-266 27 563 18 541
Pectate disaccharide-lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelW PE=2 SV=3
P14005 5.65e-116 28 545 25 539
Periplasmic pectate lyase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=pelB PE=3 SV=1
P11278 5.00e-115 2 543 6 541
Periplasmic pectate lyase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) OX=273123 GN=pelY PE=3 SV=2

SignalP and Lipop Annotations help

This protein is predicted as OTHER

Other SP_Sec_SPI LIPO_Sec_SPII TAT_Tat_SPI TATLIP_Sec_SPII PILIN_Sec_SPIII
0.999944 0.000112 0.000001 0.000000 0.000000 0.000000

TMHMM  Annotations      help

There is no transmembrane helices in MGYG000002525_04017.