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CAZyme Information: MGYG000002524_03407
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Basic Information |
Genomic context |
Full Sequence |
Enzyme annotations |
CAZy signature domains |
CDD domains |
CAZyme hits |
PDB hits |
Swiss-Prot hits |
SignalP and Lipop annotations |
TMHMM annotations
Basic Information help
| Species | Yersinia bercovieri | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Lineage | Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Yersinia; Yersinia bercovieri | |||||||||||
| CAZyme ID | MGYG000002524_03407 | |||||||||||
| CAZy Family | PL2 | |||||||||||
| CAZyme Description | Pectate disaccharide-lyase | |||||||||||
| CAZyme Property |
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| Genome Property |
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| Gene Location | Start: 30135; End: 31853 Strand: - | |||||||||||
CAZyme Signature Domains help
| Family | Start | End | Evalue | family coverage |
|---|---|---|---|---|
| PL2 | 28 | 558 | 0 | 0.998109640831758 |
CDD Domains download full data without filtering help
| Cdd ID | Domain | E-Value | qStart | qEnd | sStart | sEnd | Domain Description |
|---|---|---|---|---|---|---|---|
| pfam06917 | Pectate_lyase_2 | 0.0 | 21 | 572 | 5 | 556 | Periplasmic pectate lyase. This family consists of several Enterobacterial periplasmic pectate lyase proteins (EC:4.2.2.2). A major virulence determinant of the plant-pathogenic enterobacterium Erwinia chrysanthemi is the production of pectate lyase enzymes that degrade plant cell walls. |
CAZyme Hits help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End |
|---|---|---|---|---|---|
| QDW35247.1 | 0.0 | 1 | 572 | 1 | 572 |
| QKJ06606.1 | 0.0 | 1 | 572 | 1 | 572 |
| AKP33757.1 | 0.0 | 1 | 572 | 1 | 572 |
| QKJ02404.1 | 0.0 | 1 | 572 | 1 | 572 |
| QKJ10895.1 | 0.0 | 1 | 572 | 1 | 572 |
PDB Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| 2V8I_A | 0.0 | 27 | 569 | 1 | 543 | Structureof a Family 2 Pectate Lyase in a Native Form [Yersinia enterocolitica],2V8K_A Structure of a Family 2 Pectate Lyase in Complex with Trigalacturonic Acid [Yersinia enterocolitica] |
| 2V8J_A | 0.0 | 28 | 562 | 1 | 535 | Structureof a Family 2 Pectate Lyase in Complex with a Transition Metal [Yersinia enterocolitica] |
| 6OJK_A | 0.0 | 18 | 572 | 15 | 572 | Structureof YePL2A K291W in Complex with Tetragalacturonic Acid [Yersinia enterocolitica] |
| 6OJL_A | 0.0 | 18 | 572 | 15 | 572 | Structureof YePL2A R194K in Complex with Pentagalacturonic Acid [Yersinia enterocolitica] |
| 5A29_A | 1.04e-140 | 25 | 541 | 29 | 553 | Family2 Pectate Lyase from Vibrio vulnificus [Vibrio vulnificus YJ016] |
Swiss-Prot Hits download full data without filtering help
| Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
|---|---|---|---|---|---|---|
| P11278 | 0.0 | 1 | 572 | 1 | 572 | Periplasmic pectate lyase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) OX=273123 GN=pelY PE=3 SV=2 |
| P14005 | 0.0 | 1 | 572 | 1 | 568 | Periplasmic pectate lyase OS=Pectobacterium carotovorum subsp. carotovorum OX=555 GN=pelB PE=3 SV=1 |
| Q05526 | 9.16e-113 | 52 | 550 | 39 | 529 | Pectate disaccharide-lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=pelW PE=2 SV=3 |
SignalP and Lipop Annotations help
This protein is predicted as SP
| Other | SP_Sec_SPI | LIPO_Sec_SPII | TAT_Tat_SPI | TATLIP_Sec_SPII | PILIN_Sec_SPIII |
|---|---|---|---|---|---|
| 0.000278 | 0.998965 | 0.000190 | 0.000200 | 0.000183 | 0.000160 |