CAZyme Information: MGYG000002503_01712

Basic Information

• Species: Enterobacter ludwigii
• Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Enterobacter; Enterobacter ludwigii
• CAZyme ID: MGYG000002503_01712
• CAZy Family: PL22
• CAZyme Description: Oligogalacturonate lyase

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
391	MGYG000002503_3|CGC8	44275.61	6.0396

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002503	4697885	Isolate	Australia	Oceania

• Gene Location: Start: 432415; End: 433590 Strand: -

Full Sequence      

MAKGMRVKLNYEVSHDPDTGVEVTRLTPPDVTCHRNYFYQKCFFNDGSHLLFAGAFDGHW
NYYLLDLQKAEAVQLTEGAGDNTFGGFLSPDDKSFYYVKNDRTLLEVDLHTLVEREVYRV
PDDWVGYGTWVANSDCTKLVGIEIARRDWTPLNDWKIFHDFFHKGPHCRLLRVDLKTGLS
TTIHEEKNWLGHPIYRPFDDNTVAFCHEGPHDLVDARMWLVNEDGSHVRKVKTHAEGESC
THEFWVPNGSALVYVSYLKGQKGRTICSFNPDTGVNDAVMPMPACSHLMSNVDGSLLVGD
GSGTPVDVKDTHGYTIDNDPYLYAFDVAKKSYFRIARHDTSWATVANSRQVTHPHPSFTP
DEKAVLFSSDKDGQPALYIAKLPEQPEMLHA

Enzyme Prediction     

EC	4.2.2.6

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
PL22	215	385	3.4e-78	0.6415094339622641
PL22	32	137	5e-32	0.3886792452830189

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam14583	Pectate_lyase22	0.0	1	385	1	385	Oligogalacturonate lyase. This is a family of oligogalacturonate lyases, referred to more generally as pectate lyase family 22. These proteins fold into 7-bladed beta-propellers.
COG0823	TolB	8.76e-31	27	378	82	397	Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport].
PRK01029	tolB	8.55e-08	218	386	167	316	Tol-Pal system protein TolB.
PRK04792	tolB	1.92e-07	245	378	225	333	Tol-Pal system protein TolB.
PRK01742	tolB	3.72e-05	43	102	255	312	Tol-Pal system protein TolB.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AHE72727.1	7.80e-312	1	391	1	391
AVO99488.1	2.23e-311	1	391	1	391
QCR94346.1	2.23e-311	1	391	1	391
QCU07245.1	2.23e-311	1	391	1	391
QLA07607.1	2.23e-311	1	391	1	391

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3PE7_A	5.36e-212	1	384	1	384	Oligogalacturonatelyase in complex with manganese [Yersinia enterocolitica subsp. enterocolitica 8081]
3C5M_A	1.42e-190	2	384	2	384	Crystalstructure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_B Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633],3C5M_C Crystal structure of oligogalacturonate lyase (VPA0088) from Vibrio parahaemolyticus. Northeast Structural Genomics Consortium Target VpR199 [Vibrio parahaemolyticus RIMD 2210633]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P21258	1.69e-210	1	384	1	384	Oligogalacturonate lyase OS=Dickeya dadantii (strain 3937) OX=198628 GN=ogl PE=2 SV=2
Q59418	1.46e-204	1	384	1	384	Oligogalacturonide lyase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) OX=218491 GN=ogl PE=4 SV=2

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000064	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002503_01712.