CAZyme Information: MGYG000002484_02583

Basic Information

• Species: Cronobacter malonaticus
• Lineage: Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Cronobacter; Cronobacter malonaticus
• CAZyme ID: MGYG000002484_02583
• CAZy Family: GT107
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
681	MGYG000002484_100|CGC1	75317.51	9.9824

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002484	4470595	Isolate	Czech Republic	Europe

• Gene Location: Start: 5469; End: 7514 Strand: -

Full Sequence      

MKNMVTGIFSKGIWRIPGLAQMLPMPCRKLAPRRAIPDDITAIAVWGNRPSTAAAITRAR
KAGLAVMRLEDGFIRSVGPAAHGHPPLSLVIDYDGIYYDASQPSTLEKLIQDAPGNAALR
EAAREAMRLIVEGDLAKYNHAPPFEGSPDARAVLVVDQTAGDMSVTFGNASAASFRLMLE
TACAENPDADIWVKTHPDVVHGNKRGYLQDVSAKARIRLITEDASPQSLLRCVSRVYTVT
SHFGFEALMAGKPVVCFGQPWYAGWGLTDDRHPAAAILAARRGNASLLTLFSAAYLRYAR
YLNPQTNQPGTLFEVLEWLALQRRHQLALRGTLWVPGLSFWKRSTVKPFLATPYNRLRFT
RRAPQADACVVWGTTGETRWQSAAQARGMPVWRMEDAFLRSAGLGSDLFAPLSLVLDKRG
IYYDATRASDLEIALNAVHLRPAEEARAAALRRQIIESRLSKYNAGGAWRLPSSASGRRV
LLVPGQVIDDASLAGGTQEMRSITALLRTVRTRNPQAYIVFKPHPDVACGNRQGEPSEQD
ALRWADCLATQADIVDVLDQVHEVHTLTSLAGFEALLRGKSVFCYGMPFYAGWGLTHDEY
PCPRRTRRLTLNALIHTALIDYPLYLHPTRKTPMSVEEAVALLSASPRQNHALQCRGKTF
TRLVNKARNLFHAFFHSRCPR

Enzyme Prediction     

No EC number prediction in MGYG000002484_02583.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GT107	280	674	3.2e-143	0.75
GT107	38	309	1.5e-102	0.5056390977443609

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
COG3563	KpsC	0.0	8	674	6	670	Capsule polysaccharide export protein KpsC/LpsZ [Cell wall/membrane/envelope biogenesis].
cd16440	beta_Kdo_transferase_KpsC_1	8.12e-138	43	304	1	262	beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat1. KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.
cd16439	beta_Kdo_transferase_KpsC_2	3.75e-133	367	625	1	259	beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC, repeat 2. KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.
cd16437	beta_Kdo_transferase_KpsC	6.61e-104	43	301	1	256	beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC. KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides, that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.
cd16437	beta_Kdo_transferase_KpsC	5.23e-98	369	625	1	256	beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase KpsC. KpsC is a beta-3-deoxy-D-manno-oct-2-ulosonic acid (Kdo)-transferase. It is part of the ATP-binding cassette transporter dependent capsular polysaccharides (CPSs) synthesis pathway, one of two CPS synthesis pathways present in Escherichia coli. The poly-Kdo linker is thought to be the common feature of CPSs synthesized via this pathway. CPSs are high-molecular-mass cell-surface polysaccharides, that are important virulence factors for many pathogenic bacteria. KpsC contains a domain duplication.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
AHB71867.1	0.0	1	681	1	681
ALX79955.1	0.0	1	681	1	681
AZP34945.1	0.0	1	678	1	678
QXL94153.1	0.0	1	678	1	678
AXW93209.1	0.0	1	678	1	678

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
6MGC_A	5.57e-149	4	353	1	352	Escherichiacoli KpsC, N-terminal domain [Escherichia coli APEC O1]
6MGB_A	4.90e-72	4	319	9	321	Thermosulfurimonasdismutans KpsC, beta Kdo 2,4 transferase [Thermosulfurimonas dismutans]
6MGD_A	2.22e-61	339	640	10	315	Thermosulfurimonasdismutans KpsC, beta Kdo 2,7 transferase [Thermosulfurimonas dismutans],6MGD_B Thermosulfurimonas dismutans KpsC, beta Kdo 2,7 transferase [Thermosulfurimonas dismutans]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P42217	1.96e-276	5	649	1	647	Capsule polysaccharide export protein KpsC OS=Escherichia coli OX=562 GN=kpsC PE=4 SV=1
Q05013	3.89e-188	10	674	28	703	Capsule polysaccharide modification protein LipA OS=Neisseria meningitidis serogroup B (strain MC58) OX=122586 GN=lipA PE=4 SV=2
P57037	1.56e-187	10	674	28	703	Capsule polysaccharide modification protein LipA OS=Neisseria meningitidis serogroup A / serotype 4A (strain DSM 15465 / Z2491) OX=122587 GN=lipA PE=4 SV=1
P31858	3.51e-52	337	644	80	400	Lipopolysaccharide-processing protein LpsZ OS=Rhizobium meliloti OX=382 GN=lpsZ PE=4 SV=1

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000058	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002484_02583.