CAZyme Information: MGYG000002478_00977

Basic Information

• Species: Phocaeicola dorei
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola; Phocaeicola dorei
• CAZyme ID: MGYG000002478_00977
• CAZy Family: GH63
• CAZyme Description: Glucosidase YgjK

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
644	MGYG000002478_1|CGC28	73001.19	5.2993

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002478	5444912	Isolate	Finland	Europe

• Gene Location: Start: 1348842; End: 1350776 Strand: +

Full Sequence      

MKHKFTKIILLTAVVAGFTAACNPASENIPTGKRYEFNNILDIAYTPDTLTRCRGWFTDA
GSWMGFTLPQKDHWVNGFCGPFSLDMNRRQWMAQSAVTVGYADQANVIFTPDSTCYFPGE
LYLSASSEEGKIIQRLNFLDASTALLRIHSDAGKELSLTASQWGKEIQVQTDQNTVIARH
PSGEIVALTFTPDVSVKGTDNNYQAKINGSEHDTYVAISFYTGEKELSAGLQKAQLALSN
PQEGLKANKERWEGYLTKILRKDMKPEYDRIAVKAVVTLISNWRTHRGGLLHEGIVPSHA
AYYFVGFWAWDTWRFSAALAKFDPELAKDNIRAMFDYQQPDGMIIDCIYTDPAENNARDS
KPPLVSWAVDEIFTHTNDTAFISEMYPQLMAYYKWWYNKRDHNRNGMCEYGSTDGTLEAA
AWESGMDNAIRFDDAKMLKNNGAEDAWSMDQESVDLNAYLALECKLLKKFASILGVTFDG
PDYSSQVADYFFDKEKGFFFDRRLKDGSFIQEPGCEAYTPLWTEVATADQVKAMLPLLTD
TAKFSTYIPFPTVAADNPKYNPRGYWRGPIWLDQTYFAIRGLRNYGYNKMADEYTLQVFD
RLQGLKEGAPIHENYGTHTGELLKAPHFSWSSSHLLMLYDDYGK

Enzyme Prediction     

No EC number prediction in MGYG000002478_00977.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH63	197	642	2e-116	0.5666666666666667

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
PRK10137	PRK10137	5.65e-140	5	642	1	783	alpha-glucosidase; Provisional
COG3408	GDB1	1.63e-16	299	640	277	604	Glycogen debranching enzyme (alpha-1,6-glucosidase) [Carbohydrate transport and metabolism].
pfam01204	Trehalase	2.91e-12	360	593	178	450	Trehalase. Trehalase (EC:3.2.1.28) is known to recycle trehalose to glucose. Trehalose is a physiological hallmark of heat-shock response in yeast and protects of proteins and membranes against a variety of stresses. This family is found in conjunction with pfam07492 in fungi.
pfam03200	Glyco_hydro_63	8.09e-08	379	638	185	492	Glycosyl hydrolase family 63 C-terminal domain. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63. They catalyze the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase EC:3.2.1.106 is the first enzyme in the N-linked oligosaccharide processing pathway. This family represents the C-terminal catalytic domain.
COG1626	TreA	4.80e-04	420	641	324	554	Neutral trehalase [Carbohydrate transport and metabolism].

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QJR61716.1	0.0	1	644	1	644
AII67042.1	0.0	1	644	1	644
AII61903.1	0.0	1	644	1	644
QJR75045.1	0.0	1	644	1	644
ALA72871.1	0.0	1	644	1	644

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3W7S_A	4.21e-82	57	642	32	756	Escherichiacoli K12 YgjK complexed with glucose [Escherichia coli K-12],3W7S_B Escherichia coli K12 YgjK complexed with glucose [Escherichia coli K-12],3W7T_A Escherichia coli K12 YgjK complexed with mannose [Escherichia coli K-12],3W7T_B Escherichia coli K12 YgjK complexed with mannose [Escherichia coli K-12],3W7U_A Escherichia coli K12 YgjK complexed with galactose [Escherichia coli K-12],3W7U_B Escherichia coli K12 YgjK complexed with galactose [Escherichia coli K-12]
3W7X_A	2.20e-81	57	642	32	756	Crystalstructure of E. coli YgjK D324N complexed with melibiose [Escherichia coli K-12],3W7X_B Crystal structure of E. coli YgjK D324N complexed with melibiose [Escherichia coli K-12],5CA3_A Crystal structure of the glycosynthase mutant D324N of Escherichia coli GH63 glycosidase in complex with glucose and lactose [Escherichia coli K-12],5CA3_B Crystal structure of the glycosynthase mutant D324N of Escherichia coli GH63 glycosidase in complex with glucose and lactose [Escherichia coli K-12]
3W7W_A	3.06e-81	57	642	32	756	Crystalstructure of E. coli YgjK E727A complexed with 2-O-alpha-D-glucopyranosyl-alpha-D-galactopyranose [Escherichia coli K-12],3W7W_B Crystal structure of E. coli YgjK E727A complexed with 2-O-alpha-D-glucopyranosyl-alpha-D-galactopyranose [Escherichia coli K-12],5GW7_A Crystal structure of the glycosynthase mutant E727A of Escherichia coli GH63 glycosidase in complex with glucose and lactose [Escherichia coli K-12],5GW7_B Crystal structure of the glycosynthase mutant E727A of Escherichia coli GH63 glycosidase in complex with glucose and lactose [Escherichia coli K-12]
3D3I_A	2.28e-77	57	642	33	757	Crystalstructural of Escherichia coli K12 YgjK, a glucosidase belonging to glycoside hydrolase family 63 [Escherichia coli K-12],3D3I_B Crystal structural of Escherichia coli K12 YgjK, a glucosidase belonging to glycoside hydrolase family 63 [Escherichia coli K-12]
7PQQ_B	2.46e-42	57	413	358	769	ChainB, Anti-RON nanobody,Megabody 91,Glucosidase YgjK [Lama glama]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P42592	3.57e-81	57	642	55	779	Glucosidase YgjK OS=Escherichia coli (strain K12) OX=83333 GN=ygjK PE=1 SV=1
D8QTR2	5.57e-17	308	633	98	479	Mannosylglycerate hydrolase MGH1 OS=Selaginella moellendorffii OX=88036 GN=MGH PE=1 SV=1
D8T3S4	1.31e-16	308	633	98	479	Mannosylglycerate hydrolase MGH2 OS=Selaginella moellendorffii OX=88036 GN=SELMODRAFT_447962 PE=3 SV=1
P94250	1.11e-08	363	597	115	330	Uncharacterized protein BB_0381 OS=Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) OX=224326 GN=BB_0381 PE=4 SV=2
K5BDL0	3.67e-06	294	636	26	442	Glucosylglycerate hydrolase OS=Mycolicibacterium hassiacum (strain DSM 44199 / CIP 105218 / JCM 12690 / 3849) OX=1122247 GN=ggh PE=1 SV=1

SignalP and Lipop Annotations

This protein is predicted as LIPO

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000000	0.000002	1.000045	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002478_00977.