CAZyme Information: MGYG000002473_01723

Basic Information

• Species: Victivallis vadensis
• Lineage: Bacteria; Verrucomicrobiota; Lentisphaeria; Victivallales; Victivallaceae; Victivallis; Victivallis vadensis
• CAZyme ID: MGYG000002473_01723
• CAZy Family: GH50
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
1425	MGYG000002473_54|CGC1	159618.67	7.7397

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002473	4576885	Isolate	not provided	not provided

• Gene Location: Start: 7848; End: 12125 Strand: +

Full Sequence      

MSKLLHLYVILGTIFSLEAAPIPANPPVTAWPQLLRQGKLQGSPESSFACDGEMLVFSVP
AGRGGSMTFPVTEPSAGESFTRLELELENRGDTGTGFTIRLRSADGRAVTVHCRIEAGQC
KQAVAPMPRDRKTLETRYAAQLRDFPKMAGLPGGLFENWESVDAGDLEAVTLEFPEAAAP
LTLRIGQVRFSHPAAPSLYAAAPERFFPFIDRYGQYIHEGWPGKVKSDQELKLAWEAEKN
DLAAHRRPASFSKFGGWREGPRFKATGSFYPKKYDGKWYLADPEGYLFWSNGINCVRAET
YGTLVEGRERFFAGLPEAGTPCSAFFHNTERYGGKHLAYNFAAANLLRKYGPDWRDLHLG
LTGKRLASWGFNTVGNWSDYAGKIADFPYVLTLGHACRSSGGWRDDPFDPAHRENIEQAL
QSGRYDAAIRDPYCIGFFSGNELPWSDPVTYAGNLLREKKSPARSALTDALKRKFGKIEQ
LNTVLDTAFDSWRELEENPVKALPDLTPIEAECRNFYRTALEHYFRPIRDMIRRYAPGKL
YLGVRFMHYPDITLGEVAADFCDVVSMNRYSYDESEMRIPGRDVPILVTEFHFGALDRGM
FHPGLRWGGDQQDVAWCYTEYMKALLRNPACVGGHWFQYASQPFTGRCGDGENAQIGAVD
ITDNPRPEFRAALREVGEHLYRWRAGAQHSGDGGPVIVLPPDAIPAERTAAQELQAFLEQ
ISGEKPPIAERADAGPAIHIGQSPEAARALGVSDWKQLKPDEIILKTVGNRLYLAGDRPR
GSLYAVYELLERAYGVRFWSPAATRVPRASLQQLPRIDLRYAPPFEVRSVGSILTRNDFR
YAVRLRHNGQSAFVPPEWGGLVTLLGNVHTFSEYPDNALIPRDSGFREHPEWFAERDGRR
VPNGQLCLTNPELHRELVRRVRELLRAAPESRYISVSQNDNDDFCQCRSCAAFVEKHGNQ
SDLLLDTVNAVAAAVAEEFPATLVETLAYRYTRTPPATVKAAPNVLIRYCTFEADSFRPL
TAKQNRQFFRDLAAWSRTAKQLMIWNYIANFRKYYLPTPNWRALGPDLRTFRSFGAISVY
EQGAWNGGGSVSDLPELRTWLTARLLWNPDLDTDTLIDEFLTGYYGPGADAVRTYMKLMN
GAADRHPEVAGSGFLSTTAAWLEESTLLEAWQAVETAARQFRNDPVYGPRLAMATVPVGA
ALLERRKPLEAWKITVPDLRKLSTAGYLAETVARMKAGGGDRLREESFHNTPDEWAADLT
AEMQVFNRVLPNDGPAPAVAAGKPGAAWWRVERIADFHEVGRKVFPENDPAASTGRAVRI
ADAEPGWNVQVRRFPHGRFRFCAEVRGDLAKNASGDALEIVAFNWNSKEKTTRRFPVSKI
GRSHYRIVDFGPVTLRDDLGVMLIPARNPAVRNLRIDRIILVPER

Enzyme Prediction     

EC	3.2.1.23

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH50	82	681	2.1e-127	0.9632465543644717
GH163	879	1136	4.8e-81	0.9960159362549801

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
pfam16126	DUF4838	1.63e-85	868	1136	2	263	Domain of unknown function (DUF4838). This family consists of several uncharacterized proteins found in various Bacteroides and Chloroflexus species. The function of this family is unknown.
pfam03648	Glyco_hydro_67N	1.83e-04	709	789	35	120	Glycosyl hydrolase family 67 N-terminus. Alpha-glucuronidases, components of an ensemble of enzymes central to the recycling of photosynthetic biomass, remove the alpha-1,2 linked 4-O-methyl glucuronic acid from xylans. This family represents the N-terminal region of alpha-glucuronidase. The N-terminal domain forms a two-layer sandwich, each layer being formed by a beta sheet of five strands. A further two helices form part of the interface with the central, catalytic, module (pfam07488).

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
SDU17932.1	2.71e-143	31	707	44	730
ASV75458.1	2.49e-117	131	685	117	682
AGY53973.1	8.14e-113	80	685	67	685
QDV65278.1	2.97e-112	80	684	86	696
AXP07840.1	5.79e-112	196	688	216	722

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
4BQ2_A	2.39e-71	83	688	72	750	Structuralanalysis of an exo-beta-agarase [Saccharophagus degradans 2-40],4BQ2_B Structural analysis of an exo-beta-agarase [Saccharophagus degradans 2-40],4BQ2_C Structural analysis of an exo-beta-agarase [Saccharophagus degradans 2-40],4BQ2_D Structural analysis of an exo-beta-agarase [Saccharophagus degradans 2-40],4BQ3_A Structural analysis of an exo-beta-agarase [Saccharophagus degradans 2-40],4BQ3_B Structural analysis of an exo-beta-agarase [Saccharophagus degradans 2-40],4BQ3_C Structural analysis of an exo-beta-agarase [Saccharophagus degradans 2-40],4BQ3_D Structural analysis of an exo-beta-agarase [Saccharophagus degradans 2-40]
4BQ4_A	5.88e-71	83	688	72	750	Structuralanalysis of an exo-beta-agarase [Saccharophagus degradans 2-40],4BQ4_B Structural analysis of an exo-beta-agarase [Saccharophagus degradans 2-40],4BQ5_A Structural analysis of an exo-beta-agarase [Saccharophagus degradans 2-40],4BQ5_B Structural analysis of an exo-beta-agarase [Saccharophagus degradans 2-40]
6XJ9_A	1.30e-63	210	684	223	762	Structureof PfGH50B [Pseudoalteromonas fuliginea],6XJ9_B Structure of PfGH50B [Pseudoalteromonas fuliginea]
5Z6P_A	3.16e-63	200	681	213	759	Thecrystal structure of an agarase, AgWH50C [Agarivorans gilvus],5Z6P_B The crystal structure of an agarase, AgWH50C [Agarivorans gilvus]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P48840	2.39e-73	160	684	387	952	Beta-agarase B OS=Vibrio sp. (strain JT0107) OX=47913 GN=agaB PE=3 SV=1
P48839	4.69e-43	81	681	268	913	Beta-agarase A OS=Vibrio sp. (strain JT0107) OX=47913 GN=agaA PE=3 SV=1

SignalP and Lipop Annotations

This protein is predicted as SP

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000207	0.999197	0.000158	0.000159	0.000142	0.000136

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002473_01723.