CAZyme Information: MGYG000002470_01868

Basic Information

• Species: Bacteroides intestinalis
• Lineage: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Bacteroides; Bacteroides intestinalis
• CAZyme ID: MGYG000002470_01868
• CAZy Family: GH63
• CAZyme Description: Glucosidase YgjK

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
642	MGYG000002470_3|CGC4	72741.81	5.263

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002470	5774847	Isolate	Ireland	Europe

• Gene Location: Start: 223050; End: 224978 Strand: -

Full Sequence      

MKHKFIHIICFTLLVAGLTACTSGNKKTAEQRYTFNNILDIAYTPDTLHRCYGWFTDAGS
WMGFTLPEKAQWVNGFCGPFSLDMFRRQWMAQSAVTVDFAGNASASFVPDSTCYFPGELY
MSAHSDAGSITQRLNFADASTALLRIESDKAEDLLLTGSQWGKDVTIAVEQNSVIARHPS
GESVTVTFTPDVTLSRTENNYTALVHNPQYPVHVAISFFTSEKEMTAGLQNIPTLLNNPG
KALQANAERWEGYLTKILRKDMKPEYDRIAVKAVTTLISNWRTHRGGLLHEGIVPSHAVG
YFVGFWAWDSWRFSAGTAKFDPELAKNNIRAMFDYQQPDGMVIDCIYTDPSENNARDSKP
PLVCWAVDEIFTHTGDTAFVAEIYPQLLSYYKWWYQKRDHNRNGMCEYGATDGTLEAAAW
ESGMDNAIRFDDAVMLKNDGADDAWSMDQESVDLNAYLALECKLLKKFAGLLNATFDGPD
YSDKVADYFFDKQLNFFFDRRLKDGSFIEEPGCEAYTPLWTQIATQSQVDSMLPMLQDTA
KFSTYIPFPTIAADNPKYNPRGYWRGPIWLDQTYFAIRGLRNYGYHKLADEYTLQVFDRL
NGLKEGAPIHENYGTHTGERLKAPHFSWSSSHLLMMYDDYGK

Enzyme Prediction     

No EC number prediction in MGYG000002470_01868.

CAZyme Signature Domains

Family	Start	End	Evalue	family coverage
GH63	187	640	2.3e-114	0.5842105263157895

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
PRK10137	PRK10137	1.32e-130	12	640	9	783	alpha-glucosidase; Provisional
COG3408	GDB1	5.94e-17	306	638	285	604	Glycogen debranching enzyme (alpha-1,6-glucosidase) [Carbohydrate transport and metabolism].
pfam01204	Trehalase	5.64e-11	293	591	119	450	Trehalase. Trehalase (EC:3.2.1.28) is known to recycle trehalose to glucose. Trehalose is a physiological hallmark of heat-shock response in yeast and protects of proteins and membranes against a variety of stresses. This family is found in conjunction with pfam07492 in fungi.
pfam03200	Glyco_hydro_63	1.73e-07	377	636	185	492	Glycosyl hydrolase family 63 C-terminal domain. This is a family of eukaryotic enzymes belonging to glycosyl hydrolase family 63. They catalyze the specific cleavage of the non-reducing terminal glucose residue from Glc(3)Man(9)GlcNAc(2). Mannosyl oligosaccharide glucosidase EC:3.2.1.106 is the first enzyme in the N-linked oligosaccharide processing pathway. This family represents the C-terminal catalytic domain.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QDO68010.1	0.0	1	642	1	642
ALJ59646.1	0.0	1	642	1	642
QUT89313.1	0.0	1	642	1	642
QQA30340.1	0.0	1	642	1	642
QUT61854.1	0.0	1	642	1	642

PDB Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
3W7S_A	5.73e-78	35	640	5	756	Escherichiacoli K12 YgjK complexed with glucose [Escherichia coli K-12],3W7S_B Escherichia coli K12 YgjK complexed with glucose [Escherichia coli K-12],3W7T_A Escherichia coli K12 YgjK complexed with mannose [Escherichia coli K-12],3W7T_B Escherichia coli K12 YgjK complexed with mannose [Escherichia coli K-12],3W7U_A Escherichia coli K12 YgjK complexed with galactose [Escherichia coli K-12],3W7U_B Escherichia coli K12 YgjK complexed with galactose [Escherichia coli K-12]
3W7X_A	2.97e-77	35	640	5	756	Crystalstructure of E. coli YgjK D324N complexed with melibiose [Escherichia coli K-12],3W7X_B Crystal structure of E. coli YgjK D324N complexed with melibiose [Escherichia coli K-12],5CA3_A Crystal structure of the glycosynthase mutant D324N of Escherichia coli GH63 glycosidase in complex with glucose and lactose [Escherichia coli K-12],5CA3_B Crystal structure of the glycosynthase mutant D324N of Escherichia coli GH63 glycosidase in complex with glucose and lactose [Escherichia coli K-12]
3W7W_A	4.12e-77	35	640	5	756	Crystalstructure of E. coli YgjK E727A complexed with 2-O-alpha-D-glucopyranosyl-alpha-D-galactopyranose [Escherichia coli K-12],3W7W_B Crystal structure of E. coli YgjK E727A complexed with 2-O-alpha-D-glucopyranosyl-alpha-D-galactopyranose [Escherichia coli K-12],5GW7_A Crystal structure of the glycosynthase mutant E727A of Escherichia coli GH63 glycosidase in complex with glucose and lactose [Escherichia coli K-12],5GW7_B Crystal structure of the glycosynthase mutant E727A of Escherichia coli GH63 glycosidase in complex with glucose and lactose [Escherichia coli K-12]
3D3I_A	5.76e-75	49	640	27	757	Crystalstructural of Escherichia coli K12 YgjK, a glucosidase belonging to glycoside hydrolase family 63 [Escherichia coli K-12],3D3I_B Crystal structural of Escherichia coli K12 YgjK, a glucosidase belonging to glycoside hydrolase family 63 [Escherichia coli K-12]
7PQQ_B	1.33e-42	35	411	331	769	ChainB, Anti-RON nanobody,Megabody 91,Glucosidase YgjK [Lama glama]

Swiss-Prot Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End	Description
P42592	9.18e-78	1	640	1	779	Glucosidase YgjK OS=Escherichia coli (strain K12) OX=83333 GN=ygjK PE=1 SV=1
D8QTR2	4.05e-16	298	631	90	479	Mannosylglycerate hydrolase MGH1 OS=Selaginella moellendorffii OX=88036 GN=MGH PE=1 SV=1
D8T3S4	9.48e-16	298	631	90	479	Mannosylglycerate hydrolase MGH2 OS=Selaginella moellendorffii OX=88036 GN=SELMODRAFT_447962 PE=3 SV=1
P94250	1.93e-08	352	595	106	330	Uncharacterized protein BB_0381 OS=Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31) OX=224326 GN=BB_0381 PE=4 SV=2

SignalP and Lipop Annotations

This protein is predicted as LIPO

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
0.000000	0.000001	1.000047	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002470_01868.