CAZyme Information: MGYG000002441_00340

Basic Information

• Species: Rubneribacter badeniensis
• Lineage: Bacteria; Actinobacteriota; Coriobacteriia; Coriobacteriales; Eggerthellaceae; Rubneribacter; Rubneribacter badeniensis
• CAZyme ID: MGYG000002441_00340
• CAZy Family: GT4
• CAZyme Description: hypothetical protein

CAZyme Property

Protein Length	CGC	Molecular Weight	Isoelectric Point
422	MGYG000002441_3|CGC1	46995.31	6.4098

Genome Property

Genome Assembly ID	Genome Size	Genome Type	Country	Continent
MGYG000002441	3364395	Isolate	Germany	Europe

• Gene Location: Start: 112866; End: 114134 Strand: +

Full Sequence      

METSRAKYTGKHRIAVVTMGVKLGDETKGYTRFRFLSELLVREGFEVDLITSSFQHWEKA
QRDCSKACYRGLPYRVVFVEEPGYAKNLDLQRIRSHRVAARNLRAHFERESDSYDLIYAE
IPPNDVARVCAEAAAAHGVPFVADINDLWPEAMRMVVDIPVLSDVVFYPFARDARRVYQL
LSAAVGTSDEYAARPAKDRERPYPHVTVYVGNDVSAFDEGARRNADRIVKPEGEVWATYA
GTLGASYDLATLIEAAALIERERMPESSPRKASVRVKILGDGPDRERLERLAEELRAPVD
FLGYASYDLMAAYLCASDITVNSLVKSAAQSIVTKIGDYLASGKPMVNTGSSLEFREKVD
SEGFGVNVPAEDPRALADVLASLADRSATRKIMGAKARSVAEREFDQPHSYRAIVDLLRT
LL

Enzyme Prediction     

No EC number prediction in MGYG000002441_00340.

CDD Domains     

Cdd ID	Domain	E-Value	qStart	qEnd	sStart	sEnd	Domain Description
cd03794	GT4_WbuB-like	4.63e-44	31	415	18	391	Escherichia coli WbuB and similar proteins. This family is most closely related to the GT1 family of glycosyltransferases. WbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
cd03801	GT4_PimA-like	9.31e-24	31	419	18	366	phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.
COG0438	RfaB	3.38e-20	90	422	60	378	Glycosyltransferase involved in cell wall bisynthesis [Cell wall/membrane/envelope biogenesis].
cd03798	GT4_WlbH-like	2.29e-14	30	422	21	373	Bordetella parapertussis WlbH and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. Staphylococcus aureus CapJ may be involved in capsule polysaccharide biosynthesis. WlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
cd03807	GT4_WbnK-like	3.49e-14	167	422	116	361	Shigella dysenteriae WbnK and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.

CAZyme Hits     

Hit ID	E-Value	Query Start	Query End	Hit Start	Hit End
QOS67157.1	3.81e-231	1	422	1	429
ACV55985.1	2.07e-226	19	422	1	411
BAK44128.1	1.85e-219	11	422	22	456
AJC12291.1	6.99e-196	19	421	1	406
QTU85212.1	1.51e-181	19	422	1	402

PDB Hits     

has no PDB hit.

Swiss-Prot Hits     

has no Swissprot hit.

SignalP and Lipop Annotations

This protein is predicted as OTHER

Other	SP_Sec_SPI	LIPO_Sec_SPII	TAT_Tat_SPI	TATLIP_Sec_SPII	PILIN_Sec_SPIII
1.000080	0.000000	0.000000	0.000000	0.000000	0.000000

TMHMM  Annotations     

There is no transmembrane helices in MGYG000002441_00340.